Maarten L. Hekkelman pushed to branch master at Debian Med / dssp
Commits: 63d815c3 by Maarten L. Hekkelman at 2022-11-24T11:37:30+01:00 New upstream version 4.2.0 - - - - - 638f3dc5 by Maarten L. Hekkelman at 2022-11-24T11:37:33+01:00 Update upstream source from tag 'upstream/4.2.0' Update to upstream version '4.2.0' with Debian dir dccb3233e5ee4eab9581ef56eedf7a49bf5c9d22 - - - - - 00c61d57 by Maarten L. Hekkelman at 2022-11-24T11:50:51+01:00 depends - - - - - 7 changed files: - debian/changelog - debian/control - debian/libdssp-dev.install - − debian/libdssp4.install - − debian/patches/series - − debian/patches/unit-test-fix.patch - debian/tests/control Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,9 @@ +dssp (4.2.0-1) unstable; urgency=medium + + * New upstream release. + + -- Maarten L. Hekkelman <[email protected]> Thu, 24 Nov 2022 11:39:54 +0100 + dssp (4.0.4-1) unstable; urgency=medium * New upstream release, Closes: #1005450 ===================================== debian/control ===================================== @@ -6,7 +6,10 @@ Priority: optional Build-Depends: debhelper-compat (= 13), cmake, mrc, - libcifpp-dev, + libcifpp-dev (>= 5.0.5-2~), + libboost-dev, + libboost-regex-dev, + zlib1g-dev, libmcfp-dev Standards-Version: 4.5.0 Rules-Requires-Root: no @@ -18,8 +21,7 @@ Package: dssp Section: libdevel Architecture: any Depends: ${misc:Depends}, - ${shlibs:Depends}, - libdssp4 (= ${binary:Version}) + ${shlibs:Depends} Description: protein secondary structure assignment based on 3D structure DSSP is an application you use to assign the secondary structure of a protein based on its solved three dimensional (3D) structure. @@ -28,21 +30,11 @@ Description: protein secondary structure assignment based on 3D structure by default but can still produce the older dssp format. New is also the support of PP helices. -Package: libdssp4 -Architecture: any -Depends: ${misc:Depends}, - libcifpp5 -Multi-Arch: same -Description: The DSSP functionality, protein secondary structure assignment, - is now also available as a shared library. - . - This package contains the library file only. - Package: libdssp-dev Architecture: any Depends: ${misc:Depends}, ${shlibs:Depends}, - libdssp4 (= ${binary:Version}) + libcifpp-dev Multi-Arch: same Description: The DSSP functionality, protein secondary structure assignment, is now also available as a shared library. ===================================== debian/libdssp-dev.install ===================================== @@ -1,4 +1,4 @@ usr/lib/*/cmake/dssp/*.cmake usr/lib/*/pkgconfig/*.pc usr/include -usr/lib/*/*.so.* +usr/lib/*/*.a ===================================== debian/libdssp4.install deleted ===================================== @@ -1 +0,0 @@ -usr/lib/*/*.so ===================================== debian/patches/series deleted ===================================== @@ -1 +0,0 @@ -unit-test-fix.patch ===================================== debian/patches/unit-test-fix.patch deleted ===================================== @@ -1,22 +0,0 @@ -Description: Fix the unit-test by adding a parameter -Author: Maarten L. Hekkelman <[email protected]> -Forwarded: yes - ---- a/test/unit-test-dssp.cpp -+++ b/test/unit-test-dssp.cpp -@@ -134,7 +134,7 @@ - - std::stringstream test; - -- annotateDSSP(f.front(), dssp, true, test); -+ annotateDSSP(f.front(), dssp, true, false, test); - - cif::file rf(gTestDir / "1cbs-dssp.cif"); - -@@ -220,4 +220,4 @@ - BOOST_CHECK_EQUAL(ri.seq_id(), seqID); - BOOST_CHECK_EQUAL((char)ri.type(), secstr.front()); - } --} -\ No newline at end of file -+} ===================================== debian/tests/control ===================================== @@ -1,3 +1,3 @@ Tests: run-unit-test -Depends: @, libcifpp-dev (>= 1.0.0-2) +Depends: @ Restrictions: allow-stderr View it on GitLab: https://salsa.debian.org/med-team/dssp/-/compare/a1b5c86d3c1c284dc4eb0af95f162b8bf068f765...00c61d577a9227ebd94d8465370d5e54d8654877 -- View it on GitLab: https://salsa.debian.org/med-team/dssp/-/compare/a1b5c86d3c1c284dc4eb0af95f162b8bf068f765...00c61d577a9227ebd94d8465370d5e54d8654877 You're receiving this email because of your account on salsa.debian.org.
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