Nilesh Patra pushed to branch master at Debian Med / busco
Commits: 6a2021af by Nilesh Patra at 2021-12-12T21:54:21+05:30 Do not autospec mocked instances - - - - - bb549f8b by Nilesh Patra at 2021-12-12T21:59:07+05:30 Upload to unstable - - - - - 2 changed files: - debian/changelog - debian/patches/fix-and-disable-tests.patch Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,9 @@ +busco (5.2.2-2) unstable; urgency=medium + + * Do not autospec mocked instances (Closes: #1001535) + + -- Nilesh Patra <[email protected]> Sun, 12 Dec 2021 21:54:24 +0530 + busco (5.2.2-1) unstable; urgency=medium * New upstream version 5.2.2 ===================================== debian/patches/fix-and-disable-tests.patch ===================================== @@ -159,3 +159,32 @@ Last-Update: 2021-07-02 ) def test_config_main_validated(self, mock_config, *args): config_manager = ConfigManager.BuscoConfigManager(self.params) +--- a/tests/unittests/GenomeAnalysis_unittests.py ++++ b/tests/unittests/GenomeAnalysis_unittests.py +@@ -54,7 +54,7 @@ + + @patch("busco.analysis.GenomeAnalysis.NucleotideAnalysis.__init__") + @patch("busco.analysis.GenomeAnalysis.BuscoAnalysis.config.get") +- @patch("busco.analysis.GenomeAnalysis.BuscoAnalysis.config", autospec=True) ++ @patch("busco.analysis.GenomeAnalysis.BuscoAnalysis.config") + @patch("busco.analysis.GenomeAnalysis.MetaeukRunner") + @patch("busco.analysis.BuscoAnalysis.HMMERRunner") + def test_init_tools_eukaryota_metaeuk(self, mock_hmmer, mock_metaeuk, *args): +@@ -65,7 +65,7 @@ + + @patch("busco.analysis.GenomeAnalysis.NucleotideAnalysis.__init__") + @patch("busco.analysis.GenomeAnalysis.BuscoAnalysis.config.get") +- @patch("busco.analysis.GenomeAnalysis.BuscoAnalysis.config", autospec=True) ++ @patch("busco.analysis.GenomeAnalysis.BuscoAnalysis.config") + @patch("busco.analysis.GenomeAnalysis.ProdigalRunner") + @patch("busco.analysis.BuscoAnalysis.HMMERRunner") + def test_init_tools_prokaryota(self, mock_hmmer, mock_prodigal, *args): +@@ -76,7 +76,7 @@ + + @patch("busco.analysis.GenomeAnalysis.NucleotideAnalysis.__init__") + @patch("busco.analysis.GenomeAnalysis.BuscoAnalysis.config.get") +- @patch("busco.analysis.GenomeAnalysis.BuscoAnalysis.config", autospec=True) ++ @patch("busco.analysis.GenomeAnalysis.BuscoAnalysis.config") + @patch("busco.analysis.GenomeAnalysis.BuscoAnalysis.run_analysis") + @patch("busco.analysis.GenomeAnalysis.BuscoAnalysis.run_hmmer") + @patch("busco.analysis.GenomeAnalysis.GenomeAnalysisEukaryotesMetaeuk._run_metaeuk") View it on GitLab: https://salsa.debian.org/med-team/busco/-/compare/d10452c672d3c3c0fda959e14d41b472290a2025...bb549f8b9ace242eb436dbb16532c811421456ff -- View it on GitLab: https://salsa.debian.org/med-team/busco/-/compare/d10452c672d3c3c0fda959e14d41b472290a2025...bb549f8b9ace242eb436dbb16532c811421456ff You're receiving this email because of your account on salsa.debian.org.
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