Author: tbooth-guest Date: 2011-08-11 13:20:16 +0000 (Thu, 11 Aug 2011) New Revision: 7425
Added: trunk/packages/anfo/ trunk/packages/anfo/trunk/ trunk/packages/anfo/trunk/debian/ trunk/packages/anfo/trunk/debian/README.Debian trunk/packages/anfo/trunk/debian/changelog trunk/packages/anfo/trunk/debian/compat trunk/packages/anfo/trunk/debian/control trunk/packages/anfo/trunk/debian/copyright trunk/packages/anfo/trunk/debian/docs trunk/packages/anfo/trunk/debian/patches/ trunk/packages/anfo/trunk/debian/rules trunk/packages/anfo/trunk/debian/source/ trunk/packages/anfo/trunk/debian/source/format trunk/packages/anfo/trunk/debian/watch Log: Quick packaging of Anfo. No problems with build, though one manpage is missing. Suggest awaiting promised 1.0 release before trying to push this into Debian. Added: trunk/packages/anfo/trunk/debian/README.Debian =================================================================== --- trunk/packages/anfo/trunk/debian/README.Debian (rev 0) +++ trunk/packages/anfo/trunk/debian/README.Debian 2011-08-11 13:20:16 UTC (rev 7425) @@ -0,0 +1,7 @@ +anfo for Debian +--------------- + +Straightforward package. Lintian complains that the library component should be split +out, so I need to do that at some point. + + -- Tim Booth <[email protected]> Wed, 10 Aug 2011 18:31:11 +0100 Added: trunk/packages/anfo/trunk/debian/changelog =================================================================== --- trunk/packages/anfo/trunk/debian/changelog (rev 0) +++ trunk/packages/anfo/trunk/debian/changelog 2011-08-11 13:20:16 UTC (rev 7425) @@ -0,0 +1,18 @@ +anfo (0.98-1ubuntu4) lucid; urgency=low + + * Add zlib, bzlib, pkg-config, protobuf-compiler build deps. + + -- Tim Booth <[email protected]> Thu, 11 Aug 2011 12:57:21 +0100 + +anfo (0.98-1ubuntu1) lucid; urgency=low + + * Fix some minor permission issue. + * Move to Lucid + + -- Tim Booth <[email protected]> Thu, 11 Aug 2011 10:10:51 +0100 + +anfo (0.98-1) unstable; urgency=low + + * Initial release. Doesn't close any ITP bug. + + -- Tim Booth <[email protected]> Thu, 11 Aug 2011 10:10:31 +0100 Added: trunk/packages/anfo/trunk/debian/compat =================================================================== --- trunk/packages/anfo/trunk/debian/compat (rev 0) +++ trunk/packages/anfo/trunk/debian/compat 2011-08-11 13:20:16 UTC (rev 7425) @@ -0,0 +1 @@ +7 Added: trunk/packages/anfo/trunk/debian/control =================================================================== --- trunk/packages/anfo/trunk/debian/control (rev 0) +++ trunk/packages/anfo/trunk/debian/control 2011-08-11 13:20:16 UTC (rev 7425) @@ -0,0 +1,18 @@ +Source: anfo +Section: science +Priority: extra +Maintainer: Tim Booth <[email protected]> +Build-Depends: debhelper (>= 7.0.50~), libpopt-dev, libprotobuf-dev, libelk0-dev, libelk0, zlib1g-dev, libbz2-dev, pkg-config, protobuf-compiler +Standards-Version: 3.9.1 +Homepage: http://bioinf.eva.mpg.de/anfo/ + +Package: anfo +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends}, libpopt, libprotobuf5, libelk0 +Description: Short Read Aligner/Mapper from MPG + Anfo is a mapper in the spirit of Soap/Maq/Bowtie, but its implementation takes + more after BLAST/BLAT. It's most useful for the alignment of sequencing reads + where the DNA sequence is somehow modified (think ancient DNA or bisulphite + treatment) and/or there is more divergence between sample and reference than + what fast mappers will handle gracefully (say the reference genome is missing + and a related species is used instead). Added: trunk/packages/anfo/trunk/debian/copyright =================================================================== --- trunk/packages/anfo/trunk/debian/copyright (rev 0) +++ trunk/packages/anfo/trunk/debian/copyright 2011-08-11 13:20:16 UTC (rev 7425) @@ -0,0 +1,25 @@ +This work was packaged for Ubuntu by: + + Tim Booth <[email protected]> on Wed, 10 Aug 2011 18:31:11 +0100 + +It was downloaded from http://bioinf.eva.mpg.de/anfo/ + +Upstream Author(s): + + Udo Stenzel <[email protected]> + +Copyright: + + Copyright (C) 2009 Udo Stenzel + +License: + + GPL version 3 + see `/usr/share/common-licenses/GPL-3'. + +The Debian packaging is: + + Copyright (C) 2011 Tim Booth <[email protected]> + and is licensed under the GPL version 3, + see `/usr/share/common-licenses/GPL-3'. + Added: trunk/packages/anfo/trunk/debian/docs =================================================================== Added: trunk/packages/anfo/trunk/debian/rules =================================================================== --- trunk/packages/anfo/trunk/debian/rules (rev 0) +++ trunk/packages/anfo/trunk/debian/rules 2011-08-11 13:20:16 UTC (rev 7425) @@ -0,0 +1,18 @@ +#!/usr/bin/make -f +# -*- makefile -*- +# Sample debian/rules that uses debhelper. +# This file was originally written by Joey Hess and Craig Small. +# As a special exception, when this file is copied by dh-make into a +# dh-make output file, you may use that output file without restriction. +# This special exception was added by Craig Small in version 0.37 of dh-make. + +# Uncomment this to turn on verbose mode. +#export DH_VERBOSE=1 + +%: + dh $@ + +# ./scm files should not be executable +override_dh_fixperms : + dh_fixperms + find debian/anfo -perm -5 -type f \( -name '*.scm' \) -print0 2>/dev/null | xargs -0r chmod 644 Property changes on: trunk/packages/anfo/trunk/debian/rules ___________________________________________________________________ Added: svn:executable + * Added: trunk/packages/anfo/trunk/debian/source/format =================================================================== --- trunk/packages/anfo/trunk/debian/source/format (rev 0) +++ trunk/packages/anfo/trunk/debian/source/format 2011-08-11 13:20:16 UTC (rev 7425) @@ -0,0 +1 @@ +3.0 (quilt) Added: trunk/packages/anfo/trunk/debian/watch =================================================================== --- trunk/packages/anfo/trunk/debian/watch (rev 0) +++ trunk/packages/anfo/trunk/debian/watch 2011-08-11 13:20:16 UTC (rev 7425) @@ -0,0 +1,5 @@ +# Compulsory line, this is a version 3 file +version=3 + +http://bioinf.eva.mpg.de/anfo anfo-([.0-9]*).tar.gz + _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
