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The following page has been changed by AndreasTille: http://wiki.debian.org/DebianMed The comment on the change is: s/Debian-Med/Debian Med/ ------------------------------------------------------------------------------ * ''http://alioth.debian.org/projects/cdd'' * '''Email contact''': ''[[MailTo([EMAIL PROTECTED])]]'' * '''We are proud of''': ''[http://debian-med.alioth.debian.org/tasks existing and prospective packages]'' - * '''See our activities realtime on''': ''[http://debian-med.alioth.debian.org/ Debian-Med developer page]'' + * '''See our activities realtime on''': ''[http://debian-med.alioth.debian.org/ Debian Med developer page]'' * '''Bugs of Debian Med relevant packages''': ''http://debian-med.alioth.debian.org/bugs'' == Contributing to Debian Med == From the developer to the user, there is a long chain of tasks in which we always welcome participation. First we must keep ourselves informed about the software landscape in biology and medicine. Software to be packaged is chosen according to criteria such as users' need and the consistency of the distribution. Once in Debian, the software is monitored for its quality and bugs are fixed, if possible in collaboration with the upstream maintainer(s). All this work would not be very useful if it remains confidential. We also dedicate some time to advertise it to the world wia http://www.debian.org and to ease the integration of new members through this wiki. - Please contact us on [EMAIL PROTECTED] if you want to help to make medical and biological software available to Debian users. Next steps are the request of an account on the [http://www.alioth.debian.org Alioth] project management server and the request to access the source code repository by joining (see the hyperlink) via the Debian-Med [http://alioth.debian.org/projects/debian-med/ project page]. + Please contact us on [EMAIL PROTECTED] if you want to help to make medical and biological software available to Debian users. Next steps are the request of an account on the [http://www.alioth.debian.org Alioth] project management server and the request to access the source code repository by joining (see the hyperlink) via the Debian Med [http://alioth.debian.org/projects/debian-med/ project page]. If you speak a language other than English, you can contribute rightaway with translations of package descriptions at http://ddtp.debian.org. When working on these, you will find immediate targets for improvements of the original English versions, too. For these, though, you need access to Debian Med's source code repository. Very welcome are tutorials that guide Debian users towards the use of packages to their immediate benefit. You may also consider to write respective articles for Magazines, be they online or in print. @@ -35, +35 @@ * subversion (svn) repository at svn://svn.debian.org/debian-med/ ([http://svn.debian.org/wsvn/debian-med web svn]) * [http://debian-med.alioth.debian.org progress report] on svn repository * Mailing lists - * [http://lists.debian.org/debian-med/ Debian-Med] - general discussion list ([http://lists.debian.org/debian-med/ Archives]) + * [http://lists.debian.org/debian-med/ Debian Med] - general discussion list ([http://lists.debian.org/debian-med/ Archives]) * [http://lists.alioth.debian.org/mailman/listinfo/debian-med-packaging debian-med-packaging] - reports and discussions on packages ([http://lists.alioth.debian.org/pipermail/debian-med-packaging/ Archives]) * [http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit debian-med-commit] - report on commits to svn repository ([http://lists.alioth.debian.org/pipermail/debian-med-commit/ Archives]) * The persons who know the administrative password of the Alioth mailing lists are AndreasTille, CharlesPlessy and NelsonOliveira. @@ -98, +98 @@ a. a. Check out the source from svn. Change directory to the folder containing the debian'' directory and the '''merge''' mode of subversion. From the man page: "With this method, only the debian directory (and maybe some other modified files) are stored in the repository. At build time, the contents of the svn trunk are copied to the extracted tarball contents (and can overwrite parts of it). To choose this working model, set the svn property mergeWithUpstream on the Debian directory: {{{svn propset mergeWithUpstream 1 debian}}}" '' a. If svn-b'' (see above aliases) does not find the orig.tar.gz, then help with with setting the origDir. For best compatibility with the ["uscan"] auto-downloader from the ["devscripts"] package, it is suggested to specify the folder to folders above your package's debian folder. From within the trunk folder execute: {{{echo "origDir=.." >> .svn/deb-layout}}}. To retrieve the latest version of the package, if the debian/watch file is correctly set, then execute "uscan" as usual. '' == Related pages == - * [http://www.debian.org/devel/debian-med/ Debian-Med home page] + * [http://www.debian.org/devel/debian-med/ Debian Med home page] * DebianMedBio * ["pkg-bioc"], The packaging effort for the !BioConductor R libraries * ["pkg-escience"], Effort to provide packages for controlling web services in bioinformatics @@ -107, +107 @@ * ["debichem"], applications for chemistry ([http://debichem.alioth.debian.org/ Alioth]) * [http://en.wikipedia.org/wiki/List_of_open_source_healthcare_software Quite complete list of medical software in WikiPedia] == See also == - * The work of the Debian-Med packaging team in [http://qa.debian.org/[EMAIL PROTECTED] Debian] and [https://launchpad.net/~debian-med-packaging/+packages Ubuntu]. + * The work of the Debian Med packaging team in [http://qa.debian.org/[EMAIL PROTECTED] Debian] and [https://launchpad.net/~debian-med-packaging/+packages Ubuntu]. * DebianMedPastMembers. * Supported Open Access Journals * Genome Biology @@ -119, +119 @@ * News sites * [http://www.linuxmednews.com/ LinuxMedNews] * Similar Initiatives - * [http://www.biopuppy.org BioPuppy] - Debian-Med packages are transformed to a Puppy-based LiveCD + * [http://www.biopuppy.org BioPuppy] - Debian Med packages are transformed to a Puppy-based LiveCD * [http://nebc.nox.ac.uk/biolinux.html Bio-Linux] .deb packages * [http://www.bioinf.med.uni-goettingen.de/teaching/goebixdvd/ GoeBix] Bioinformatics LiveDVD from Göttingen (existing) * [http://open-bio.org/wiki/BOSC/liveCD BOSC Live CD] (planned) _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
