على الإثنين 5 حزيران 2017 08:43، كتب Ian Jackson: > > I think we should take a test case or two to the Technical Committee. > > Before doing that, it would be wise to try to find the answer to the > key question which the TC will ask. Suppose A recommends B. In what > way, or in what circumstances, will A fail due to lack of B ? > > In #849619 I don't see the answer to that question. >
I see now that python-networkx has some integration with those visualization libraries [1], which is not what I expected to be the case, though the page also says: ~~~ NetworkX provides basic functionality for visualizing graphs, but its main goal is to enable graph analysis rather than perform graph visualization. In the future, graph visualization functionality may be removed from NetworkX or only available as an add-on package. ~~~ so I guess until that integration is removed, it makes sense to keep it as Recommends. My main problem remains, however, and it is that networkx brings in a graphics stack when you try to install pbhoney on a headless machine, like cluster compute nodes. See in an unstable chroot: # apt-get install pbhoney Reading package lists... Done Building dependency tree ... The following NEW packages will be installed: blasr blt ca-certificates dbus file fontconfig fontconfig-config fonts-liberation fonts-lyx gnome-icon-theme graphviz gtk-update-icon-cache hicolor-icon-theme javascript-common krb5-locales libaec0 libann0 libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3 libblas-common libblas3 libblasr libbsd0 libcairo2 libcdt5 libcgraph6 libcroco3 libcups2 libcurl3-gnutls libdatrie1 libdbus-1-3 libexpat1 libexpat1-dev libffi6 libfontconfig1 libfreetype6 libgail-common libgail18 libgd3 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran3 libglade2-0 libglib2.0-0 libglib2.0-data libgnutls30 libgraphite2-3 libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-bin libgtk2.0-common libgts-0.7-5 libgts-bin libgvc6 libgvpr2 libharfbuzz0b libhdf5-100 libhdf5-cpp-100 libhogweed4 libhts1 libice6 libicu57 libidn2-0 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap-2.4-2 libldap-common libltdl7 libmagic-mgc libmagic1 libnettle6 libnghttp2-14 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpbbam libpbdata libpbihdf libpbseq libpixman-1-0 libpng16-16 libpsl5 libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib librsvg2-2 librsvg2-common librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsm6 libssh2-1 libssl1.1 libsz2 libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libunistring0 libwebp6 libwebpdemux2 libwebpmux2 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxdot4 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml2 libxmu6 libxpm4 libxrandr2 libxrender1 libxss1 libxt6 libyaml-0-2 mime-support openssl pbdagcon pbhoney pbjelly publicsuffix python python-cairo python-cycler python-dateutil python-decorator python-dev python-functools32 python-glade2 python-gobject-2 python-gtk2 python-h5py python-imaging python-intervaltree python-intervaltree-bio python-matplotlib python-matplotlib-data python-minimal python-networkx python-numpy python-pbbanana python-pbsuite-utils python-pil python-pkg-resources python-pygraphviz python-pyparsing python-pysam python-scipy python-six python-sortedcontainers python-subprocess32 python-tk python-tz python-yaml python2.7 python2.7-dev python2.7-minimal samtools sgml-base shared-mime-info tk8.6-blt2.5 ttf-bitstream-vera ucf x11-common xdg-user-dirs xml-core 0 upgraded, 197 newly installed, 0 to remove and 0 not upgraded. Need to get 98.7 MB/120 MB of archives. After this operation, 361 MB of additional disk space will be used. and without recommends: The following NEW packages will be installed: blasr libaec0 libblas-common libblas3 libblasr libcurl3-gnutls libexpat1 libffi6 libgfortran3 libgnutls30 libgssapi-krb5-2 libhdf5-100 libhdf5-cpp-100 libhogweed4 libhts1 libidn2-0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common libnettle6 libnghttp2-14 libp11-kit0 libpbbam libpbdata libpbihdf libpbseq libpsl5 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib librtmp1 libsasl2-2 libsasl2-modules-db libssh2-1 libssl1.1 libsz2 libtasn1-6 libunistring0 mime-support pbhoney pbjelly python python-decorator python-h5py python-intervaltree python-intervaltree-bio python-minimal python-networkx python-numpy python-pbbanana python-pbsuite-utils python-pysam python-six python-sortedcontainers python2.7 python2.7-minimal samtools 0 upgraded, 61 newly installed, 0 to remove and 0 not upgraded. Need to get 15.0 MB/23.8 MB of archives. After this operation, 86.6 MB of additional disk space will be used. But with the latter, you won't get pbdagcon (Recommends of pbhoney) and will end up using pbhoney's inferior fallback implementation. regards Afif 1. https://networkx.github.io/documentation/networkx-1.10/reference/drawing.html -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name
