Package: wnpp Severity: wishlist Owner: Andreas Tille <ti...@debian.org>
* Package name : maffilter Version : 1.1.0 Upstream Author : Julien Dutheil <julien.duth...@univ-montp2.fr> * URL : http://biopp.univ-montp2.fr/repos/sources/maffilter/ * License : CeCILL Programming Lang: C++ Description : process genome alignment in the Multiple Alignment Format MafFilter applies a series of "filters" to a MAF file, in order to clean it, extract data and computer statistics while keeping track of the associated meta-data such as genome coordinates and quality scores. . * It can process the alignment to remove low-quality / ambiguous / masked regions. * It can export data into a single or multiple alignment file in format such as Fasta or Clustal. * It can read annotation data in GFF or GTF format, and extract the corresponding alignment. * It can perform sliding windows calculations. * It can reconstruct phylogeny/genealogy along the genome alignment. * It can compute population genetics statistics, such as site frequency spectrum, number of fixed/polymorphic sites, etc. This package will be maintained by the Debian Med team at https://anonscm.debian.org/git/debian-med/maffilter.git
