Package: wnpp Severity: wishlist Owner: Andreas Tille <ti...@debian.org>
* Package name : ea-utils Version : 1.1.2 Upstream Author : Erik Aronesty <e...@q32.com> * URL : https://code.google.com/p/ea-utils/ * License : MIT Programming Lang: C Description : command-line tools for processing biological sequencing data i Ea-utils provides a set of command-line tools for processing biological sequencing data, barcode demultiplexing, adapter trimming, etc. . Primarily written to support an Illumina based pipeline - but should work with any FASTQs. . Main Tools are: . * fastq-mcf Scans a sequence file for adapters, and, based on a log-scaled threshold, determines a set of clipping parameters and performs clipping. Also does skewing detection and quality filtering. * fastq-multx Demultiplexes a fastq. Capable of auto-determining barcode id's based on a master set fields. Keeps multiple reads in-sync during demultiplexing. Can verify that the reads are in-sync as well, and fail if they're not. * fastq-join Similar to audy's stitch program, but in C, more efficient and supports some automatic benchmarking and tuning. It uses the same "squared distance for anchored alignment" as other tools. * varcall Takes a pileup and calculates variants in a more easily parameterized manner than some other tools. This package was prepared by Tim Booth for BioLinux to update the qiime package. It is taken over into the Debian Med team and will be maintained at git://anonscm.debian.org/debian-med/ea-utils.git -- To UNSUBSCRIBE, email to debian-devel-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/20150725102322.6843.96528.report...@mail.an3as.eu
