Package: wnpp Severity: wishlist Owner: Steffen Moeller <steffen_moel...@gmx.de>
* Package name : soap2 Version : 2.20 * URL : http://soap.genomics.org.cn/soapaligner.html * License : GPL-3 Programming Lang: C Description : SOAPaligner of short next generation sequencing data Vcs-Browser: http://svn.debian.org/viewvc/debian-med/trunk/packages/soap/soap2/ Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/soap/soap2/ Description: <insert up to 60 chars description> SOAPaligner/soap2 is a member of the Short Oligonucleotide Analysis Package (SOAP) and an updated version of SOAP software for short oligonucleotide alignment (soap v1). The new program features in super fast and accurate alignment for huge amounts of short reads generated by Illumina/Solexa Genome Analyzer. Compared to soap v1, it is one order of magnitude faster. It require only 2 minutes aligning one million single-end reads onto the human reference genome. Another remarkable improvement of SOAPaligner is that it now supports a wide range of the read length. . SOAPaligner/soap2 benefitted in time and space efficiency by a revolution in the basic data structures and algorithms used. The core algorithms and the indexing data structures (2way-BWT) are developed by the algorithms research group of the Department of Computer Science, the University of Hong Kong (T.W. Lam, Alan Tam, Simon Wong, Edward Wu and S.M. Yiu). -- To UNSUBSCRIBE, email to debian-devel-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20120421215539.10090.95402.report...@gpu1.dermacloud.uni-luebeck.de
