Package: wnpp Severity: wishlist Owner: andr...@an3as.eu * Package name : probalign Version : 1.4 Upstream Author : Usman Roshan <us...@cs.njit.edu> * URL : http://cs.njit.edu/usman/probalign/ * License : Public Domain Programming Lang: C++ Description : multiple sequence alignment using partition function posterior probabilities Probalign uses partition function posterior probability estimates to compute maximum expected accuracy multiple sequence alignments. It performs statistically significantly better than the leading alignment programs Probcons v1.1, MAFFT v5.851, and MUSCLE v3.6 on BAliBASE 3.0, HOMSTRAD, and OXBENCH benchmarks. Probalign improvements are largest on datasets containing N/C terminal extensions and on datasets with long and heterogeneous length sequences. On heteregeneous length datasets containing repeats Probalign alignment accuracy is 10% and 15% than the other three methods when standard deviation of length is at least 300 and 400.
The package will be maintained by the Debian Med packaging team and is ready for upload at Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/probalign/trunk/?rev=0&sc=0 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/probalign/trunk/ -- System Information: Debian Release: squeeze/sid APT prefers stable APT policy: (500, 'stable') Architecture: i386 (i686) -- To UNSUBSCRIBE, email to debian-devel-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20110202163915.4003.65326.report...@mail.an3as.eu
