We are running a service that automatically converts the 2300+ R packages from CRAN (http://cran.r-project.org) into Debian binaries for both amd64 and i386 on testing. This is joint work with Charles Blundell (CC'ed), which we started when it was his GSoC 2008 gig. We use a Xen instance which is running testing that is being made available to us at WU Vienna.
Every now and then mini-dinstall throws us a curve ball. Right now I am seeing the errors below on my testing box (which is otherwise current). What can we do to fix the index file? I have removed Packages*, Release*, Sources*, the Berkeley db file testing.db and others but I can't seem to find a reliable fix. I also run apt-cacher-ng locally but that does not seem to be the issue as we also get mismatches on the build machine itself which is not running any caches. Any hints? We looked into replacing mini-dinstall with reprepro. Is that the best solution? Are there better reference docs that the one or two hits Google finds? I can supply more details if that helped. Many thanks, Dirk e...@ron:~> wajig dist-upgrade Reading package lists... Done Building dependency tree Reading state information... Done Calculating upgrade... Done The following packages will be upgraded: r-cran-accuracy r-cran-actuar r-cran-ape r-cran-bit r-cran-chron r-cran-coin r-cran-digest r-cran-doby r-cran-e1071 r-cran-ff r-cran-filehash r-cran-fints r-cran-gbm r-cran-gdata r-cran-geometry r-cran-ggplot2 r-cran-gsl r-cran-gsubfn r-cran-gwidgetsrgtk2 r-cran-igraph r-cran-kernlab r-cran-latticeextra r-cran-lme4 r-cran-maptree r-cran-mgcv r-cran-msm r-cran-mvtnorm r-cran-pcapp r-cran-pmml r-cran-portfolio r-cran-portfoliosim r-cran-quantreg r-cran-r.oo r-cran-rbgl r-cran-rcpp r-cran-rcurl r-cran-rgl r-cran-robustbase r-cran-rsqlite r-cran-runjags r-cran-sandwich r-cran-sparsem r-cran-spatial r-cran-suppdists r-cran-svmisc r-cran-timedate r-cran-timeseries r-cran-tseries r-cran-xts 49 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 45.2MB of archives. After this operation, 1,733kB disk space will be freed. Do you want to continue [Y/n]? y WARNING: The following packages cannot be authenticated! r-cran-accuracy r-cran-actuar r-cran-ape r-cran-bit r-cran-chron r-cran-mvtnorm r-cran-coin r-cran-digest r-cran-doby r-cran-e1071 r-cran-ff r-cran-filehash r-cran-fints r-cran-gbm r-cran-gdata r-cran-geometry r-cran-ggplot2 r-cran-gsl r-cran-gsubfn r-cran-gwidgetsrgtk2 r-cran-igraph r-cran-kernlab r-cran-latticeextra r-cran-lme4 r-cran-maptree r-cran-mgcv r-cran-msm r-cran-pcapp r-cran-pmml r-cran-portfolio r-cran-portfoliosim r-cran-sparsem r-cran-quantreg r-cran-r.oo r-cran-rbgl r-cran-rcpp r-cran-rcurl r-cran-rgl r-cran-robustbase r-cran-rsqlite r-cran-runjags r-cran-sandwich r-cran-spatial r-cran-suppdists r-cran-svmisc r-cran-timedate r-cran-timeseries r-cran-tseries r-cran-xts Install these packages without verification [y/N]? y Get:1 http://debian.cran.r-project.org testing/ r-cran-accuracy 1.35-1cran1 [1,746kB] Get:2 http://debian.cran.r-project.org testing/ r-cran-actuar 1.1-0-1cran1 [1,108kB] Get:3 http://debian.cran.r-project.org testing/ r-cran-ape 2.5-2-1cran1 [943kB] Get:4 http://debian.cran.r-project.org testing/ r-cran-bit 1.1-4-1cran1 [131kB] Get:5 http://debian.cran.r-project.org testing/ r-cran-chron 2.3-35-1cran1 [98.0kB] Get:6 http://debian.cran.r-project.org testing/ r-cran-mvtnorm 0.9-9-1cran1 [209kB] Get:7 http://debian.cran.r-project.org testing/ r-cran-coin 1.0-11-1cran1 [3,326kB] Get:8 http://debian.cran.r-project.org testing/ r-cran-digest 0.4.2-1cran1 [40.4kB] Get:9 http://debian.cran.r-project.org testing/ r-cran-doby 4.0.6-1cran1 [251kB] Get:10 http://debian.cran.r-project.org testing/ r-cran-e1071 1.5-24-1cran1 [450kB] Get:11 http://debian.cran.r-project.org testing/ r-cran-ff 2.1-2-1cran1 [606kB] Get:12 http://debian.cran.r-project.org testing/ r-cran-filehash 2.1-1cran1 [232kB] Get:13 http://debian.cran.r-project.org testing/ r-cran-fints 0.4-4-1cran1 [5,610kB] Get:14 http://debian.cran.r-project.org testing/ r-cran-gbm 1.6-3.1-1cran1 [333kB] Get:15 http://debian.cran.r-project.org testing/ r-cran-gdata 2.8.0-1cran1 [759kB] Get:16 http://debian.cran.r-project.org testing/ r-cran-geometry 0.1-7-1cran1 [436kB] Get:17 http://debian.cran.r-project.org testing/ r-cran-ggplot2 0.8.7-1cran1 [2,444kB] Get:18 http://debian.cran.r-project.org testing/ r-cran-gsl 1.9-3-1cran1 [371kB] Get:19 http://debian.cran.r-project.org testing/ r-cran-gsubfn 0.5-2-1cran1 [353kB] Get:20 http://debian.cran.r-project.org testing/ r-cran-gwidgetsrgtk2 0.0-65-1cran1 [621kB] Get:21 http://debian.cran.r-project.org testing/ r-cran-igraph 0.5.3-1cran1 [1,596kB] Get:22 http://debian.cran.r-project.org testing/ r-cran-kernlab 0.9-10-1cran1 [1,788kB] Get:23 http://debian.cran.r-project.org testing/ r-cran-latticeextra 0.6-11-1cran1 [2,032kB] Get:24 http://debian.cran.r-project.org testing/ r-cran-lme4 0.999375-33-1cran1 [883kB] Get:25 http://debian.cran.r-project.org testing/ r-cran-maptree 1.4-6-1cran1 [111kB] Get:26 http://debian.cran.r-project.org testing/ r-cran-mgcv 1.6-2-1cran1 [692kB] Get:27 http://debian.cran.r-project.org testing/ r-cran-msm 0.9.7-1cran1 [776kB] Get:28 http://debian.cran.r-project.org testing/ r-cran-pcapp 1.8-1-1cran1 [119kB] Get:29 http://debian.cran.r-project.org testing/ r-cran-pmml 1.2.22-1cran1 [83.4kB] Get:30 http://debian.cran.r-project.org testing/ r-cran-portfolio 0.4-5-1cran1 [1,525kB] Get:31 http://debian.cran.r-project.org testing/ r-cran-portfoliosim 0.2-6-1cran1 [2,909kB] Get:32 http://debian.cran.r-project.org testing/ r-cran-sparsem 0.85-1cran1 [871kB] Get:33 http://debian.cran.r-project.org testing/ r-cran-quantreg 4.47-1cran1 [1,369kB] Get:34 http://debian.cran.r-project.org testing/ r-cran-r.oo 1.7.2-1cran1 [718kB] Get:35 http://debian.cran.r-project.org testing/ r-cran-rbgl 1.24.0-1cran1 [849kB] Get:36 http://debian.cran.r-project.org testing/ r-cran-rcpp 0.8.0-1cran1 [784kB] Get:37 http://debian.cran.r-project.org testing/ r-cran-rcurl 1.4-2-1cran1 [623kB] Get:38 http://debian.cran.r-project.org testing/ r-cran-rgl 0.91-1cran1 [1,598kB] Get:39 http://debian.cran.r-project.org testing/ r-cran-robustbase 0.5-0-1-1cran1 [660kB] Get:40 http://debian.cran.r-project.org testing/ r-cran-rsqlite 0.9-0-1cran1 [566kB] Get:41 http://debian.cran.r-project.org testing/ r-cran-runjags 0.9.6-4-1cran1 [166kB] Get:42 http://debian.cran.r-project.org testing/ r-cran-sandwich 2.2-6-1cran1 [947kB] Get:43 http://debian.cran.r-project.org testing/ r-cran-spatial 7.3-2-1cran1 [98.8kB] Get:44 http://debian.cran.r-project.org testing/ r-cran-suppdists 1.1-8-1cran1 [198kB] Get:45 http://debian.cran.r-project.org testing/ r-cran-svmisc 0.9-57-1cran1 [129kB] Get:46 http://debian.cran.r-project.org testing/ r-cran-timedate 2110.88-1cran1 [1,167kB] Get:47 http://debian.cran.r-project.org testing/ r-cran-timeseries 2110.87-1cran1 [1,127kB] Get:48 http://debian.cran.r-project.org testing/ r-cran-tseries 0.10-22-1cran1 [295kB] Get:49 http://debian.cran.r-project.org testing/ r-cran-xts 0.7-1-1cran1 [412kB] Fetched 20.2MB in 2s (9,197kB/s) Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-accuracy_1.35-1cran1_i386.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-actuar_1.1-0-1cran1_i386.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-ape_2.5-2-1cran1_i386.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-bit_1.1-4-1cran1_i386.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-chron_2.3-35-1cran1_i386.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-mvtnorm_0.9-9-1cran1_i386.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-coin_1.0-11-1cran1_i386.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-digest_0.4.2-1cran1_i386.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-doby_4.0.6-1cran1_all.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-e1071_1.5-24-1cran1_i386.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-ff_2.1-2-1cran1_i386.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-filehash_2.1-1cran1_i386.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-fints_0.4-4-1cran1_all.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-gbm_1.6-3.1-1cran1_i386.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-gdata_2.8.0-1cran1_all.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-geometry_0.1-7-1cran1_i386.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-ggplot2_0.8.7-1cran1_all.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-gsl_1.9-3-1cran1_i386.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-gsubfn_0.5-2-1cran1_all.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-gwidgetsrgtk2_0.0-65-1cran1_all.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-igraph_0.5.3-1cran1_i386.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-kernlab_0.9-10-1cran1_i386.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-latticeextra_0.6-11-1cran1_all.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-lme4_0.999375-33-1cran1_i386.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-maptree_1.4-6-1cran1_all.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-mgcv_1.6-2-1cran1_i386.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-msm_0.9.7-1cran1_i386.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-pcapp_1.8-1-1cran1_i386.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-pmml_1.2.22-1cran1_all.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-portfolio_0.4-5-1cran1_all.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-portfoliosim_0.2-6-1cran1_all.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-sparsem_0.85-1cran1_i386.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-quantreg_4.47-1cran1_i386.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-r.oo_1.7.2-1cran1_all.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-rbgl_1.24.0-1cran1_i386.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-rcpp_0.8.0-1cran1_i386.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-rcurl_1.4-2-1cran1_i386.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-rgl_0.91-1cran1_i386.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-robustbase_0.5-0-1-1cran1_i386.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-rsqlite_0.9-0-1cran1_i386.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-runjags_0.9.6-4-1cran1_all.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-sandwich_2.2-6-1cran1_all.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-spatial_7.3-2-1cran1_i386.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-suppdists_1.1-8-1cran1_i386.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-svmisc_0.9-57-1cran1_all.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-timedate_2110.88-1cran1_all.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-timeseries_2110.87-1cran1_all.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-tseries_0.10-22-1cran1_i386.deb Size mismatch Failed to fetch http://debian.cran.r-project.org/cran2deb/debian-i386/testing/r-cran-xts_0.7-1-1cran1_i386.deb Size mismatch E: Unable to fetch some archives, maybe run apt-get update or try with --fix-missing? e...@ron:~> -- Regards, Dirk -- To UNSUBSCRIBE, email to debian-devel-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/19451.17248.488960.954...@ron.nulle.part
