I also had this problem and solved it by installing (more exactly: 
self-compiling)
the eclips-3.2.1 packages from experimental on my machine.

As far as I had figured out, the problem was indeed that gcj did not find 
*usable*
versions of native libraries (like assumed by Michael Koch, stated in
 Mike O'Connor's mail).

In particular, the org.eclipse*so files generated under /tmp did already
exist (of course without that "sowtu7my" or similar "suffix"), but they
were linked against some libgcj.so* version that was not available anymore
on my system. As a consequence, the installed org.eclipse*.so files were not
usable and obviously gij tried to generate them. So to track down the problem,
check against which libgcj.so* library the org.eclipse*.so on your system are
linked against.

I think the problem is caused by a "version mismatch" of the intalled version
of  eclipse-*-gcj packages and the libgcj package, so just re-generating the
eclipse-3.1.2 packages may solve the problem.

Alternatively, the eclipse 3.2.1 packages from experimental may be promoted to
unstable, if this is currently an option ;-)

Kind regards,
Vivenzio
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