Package: src:kerchunk Version: 0.2.10-1 Severity: serious Tags: ftbfs forky sid
Dear maintainer: During a rebuild of all packages in unstable, this package failed to build. Below you will find the last part of the build log (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202608/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you cannot reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:kerchunk, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <AsyncGroup <FsspecStore(ReferenceFileSystem, /)>>, key = 'FP_line' async def getitem( self, key: str, ) -> AnyAsyncArray | AsyncGroup: """ Get a subarray or subgroup from the group. Parameters ---------- key : str Array or group name Returns ------- AsyncArray or AsyncGroup """ store_path = self.store_path / key logger.debug("key=%s, store_path=%s", key, store_path) # Consolidated metadata lets us avoid some I/O operations so try that first. if self.metadata.consolidated_metadata is not None: return self._getitem_consolidated(store_path, key, prefix=self.name) try: return await get_node( store=store_path.store, path=store_path.path, zarr_format=self.metadata.zarr_format ) except FileNotFoundError as e: > raise KeyError(key) from e E KeyError: 'FP_line' /usr/lib/python3/dist-packages/zarr/core/group.py:737: KeyError During handling of the above exception, another exception occurred: def test1(): here = os.path.dirname(__file__) fn = os.path.join(here, "MOD14.hdf4") > out = kerchunk.hdf4.HDF4ToZarr(fn).translate() ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ../../../tests/test_hdf4.py:13: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ kerchunk/hdf4.py:149: in translate arr = g.require_array( /usr/lib/python3/dist-packages/zarr/core/group.py:2823: in require_array return Array(self._sync(self._async_group.require_array(name, shape=shape, **kwargs))) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ /usr/lib/python3/dist-packages/zarr/core/sync.py:199: in _sync return sync( /usr/lib/python3/dist-packages/zarr/core/sync.py:154: in sync raise return_result /usr/lib/python3/dist-packages/zarr/core/sync.py:114: in _runner return await coro ^^^^^^^^^^ /usr/lib/python3/dist-packages/zarr/core/group.py:1268: in require_array ds = await self.create_array(name, shape=shape, dtype=dtype, **kwargs) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ /usr/lib/python3/dist-packages/zarr/core/group.py:1199: in create_array return await create_array( /usr/lib/python3/dist-packages/zarr/core/array.py:4743: in create_array return await init_array( /usr/lib/python3/dist-packages/zarr/core/array.py:4476: in init_array chunks_normalized = normalize_chunks_nd(chunks, shape_parsed) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ /usr/lib/python3/dist-packages/zarr/core/chunk_grids.py:800: in normalize_chunks_nd tuple(normalize_chunks_1d(c, span=s) for c, s in zip(chunks, shape, strict=True)) ^^^^^ /usr/lib/python3/dist-packages/zarr/core/chunk_grids.py:800: in <genexpr> tuple(normalize_chunks_1d(c, span=s) for c, s in zip(chunks, shape, strict=True)) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ chunks = 0, span = 0 def normalize_chunks_1d( chunks: int | Iterable[object], span: int ) -> np.ndarray[tuple[int], np.dtype[np.int64]]: """ Normalize a one-dimensional chunk specification into a 1D int64 array of chunk sizes that cover the span. `-1` means "one chunk covering the entire span." For an integer chunk size, all chunks are uniform â the last chunk may overhang the span. The actual data extent of each chunk is determined by the chunk grid at runtime, not by this function. """ if chunks == -1: return np.array([span], dtype=np.int64) if isinstance(chunks, int): if chunks <= 0: > raise ValueError(f"Chunk size must be positive, got {chunks}") E ValueError: Chunk size must be positive, got 0 /usr/lib/python3/dist-packages/zarr/core/chunk_grids.py:736: ValueError =============================== warnings summary =============================== ../../../../../../usr/lib/python3/dist-packages/_pytest/config/__init__.py:1464 /usr/lib/python3/dist-packages/_pytest/config/__init__.py:1464: PytestConfigWarning: Unknown config option: asyncio_default_fixture_loop_scope self._warn_or_fail_if_strict(f"Unknown config option: {key}\n") ../../../tests/test_fits.py:18 /<<PKGBUILDDIR>>/tests/test_fits.py:18: PytestUnknownMarkWarning: Unknown pytest.mark.remotedata - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.remotedata ../../../tests/test_fits.py:43 /<<PKGBUILDDIR>>/tests/test_fits.py:43: PytestUnknownMarkWarning: Unknown pytest.mark.remotedata - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.remotedata ../../../tests/test_grib.py:57 /<<PKGBUILDDIR>>/tests/test_grib.py:57: PytestUnknownMarkWarning: Unknown pytest.mark.remotedata - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.remotedata ../../../tests/test_grib.py:287 /<<PKGBUILDDIR>>/tests/test_grib.py:287: PytestUnknownMarkWarning: Unknown pytest.mark.remotedata - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.remotedata ../../../tests/test_grib.py:305 /<<PKGBUILDDIR>>/tests/test_grib.py:305: PytestUnknownMarkWarning: Unknown pytest.mark.remotedata - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.remotedata ../../../../../../usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py:36 /usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py:36: UserWarning: h5py is running against HDF5 2.2.0 when it was built against 2.1.0, this may cause problems _warn(("h5py is running against HDF5 {0} when it was built against {1}, " ../../../tests/test_hdf.py:24 /<<PKGBUILDDIR>>/tests/test_hdf.py:24: PytestUnknownMarkWarning: Unknown pytest.mark.remotedata - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.remotedata ../../../tests/test_hdf.py:45 /<<PKGBUILDDIR>>/tests/test_hdf.py:45: PytestUnknownMarkWarning: Unknown pytest.mark.remotedata - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.remotedata ../../../tests/test_hdf.py:87 /<<PKGBUILDDIR>>/tests/test_hdf.py:87: PytestUnknownMarkWarning: Unknown pytest.mark.remotedata - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.remotedata tests/test_combine.py::test_fixture /<<PKGBUILDDIR>>/tests/test_combine.py:251: ZarrUserWarning: fs (<fsspec.implementations.reference.ReferenceFileSystem object at 0x7f5803158cd0>) was not created with `asynchronous=True`, this may lead to surprising behavior store = zarr.storage.FsspecStore(fs) tests/test_combine.py::test_fixture /usr/lib/python3/dist-packages/zarr/storage/_fsspec.py:258: ZarrUserWarning: fs (<fsspec.implementations.reference.ReferenceFileSystem object at 0x7f5803158cd0>) was not created with `asynchronous=True`, this may lead to surprising behavior return type(self)( tests/test_combine.py::test_chunk_error /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_kerchunk/build/kerchunk/combine.py:403: UserWarning: Concatenated coordinate 'time' contains less than expectednumber of values across the datasets: [1] warnings.warn( tests/test_grib.py::test_grib_tree /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_kerchunk/build/kerchunk/combine.py:403: UserWarning: Concatenated coordinate 'time' contains less than expectednumber of values across the datasets: [1665709200] warnings.warn( tests/test_grib.py::test_grib_tree /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_kerchunk/build/kerchunk/combine.py:403: UserWarning: Concatenated coordinate 'step' contains less than expectednumber of values across the datasets: [0.25] warnings.warn( tests/test_grib.py::test_hrrr_subhf_corrected_grib_tree tests/test_grib.py::test_hrrr_sfcf_grib_tree /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_kerchunk/build/kerchunk/combine.py:403: UserWarning: Concatenated coordinate 'time' contains less than expectednumber of values across the datasets: [1695862800] warnings.warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========================== short test summary info ============================ FAILED ../../../tests/test_hdf4.py::test1 - ValueError: Chunk size must be po... ===== 1 failed, 81 passed, 7 skipped, 22 deselected, 17 warnings in 6.16s ====== E: pybuild pybuild:485: test: plugin pyproject failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_kerchunk/build; python3.14 -m pytest -v -m "not remotedata" -k "not test_single_append_parquet and not test_zarr_combine and not test_string_null and not test_string_decode and not test_compound_string_null and not test_compound_string_encode and not test_var and not test_malicious_chunks" /<<PKGBUILDDIR>>/tests dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.13 3.14" --parallel=2 returned exit code 13 make: *** [debian/rules:24: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2 --------------------------------------------------------------------------------
