Your message dated Thu, 08 Jan 2026 09:06:53 +0000
with message-id <[email protected]>
and subject line Bug#1123531: fixed in toil 9.1.2-1
has caused the Debian Bug report #1123531,
regarding toil: FTBFS: E ModuleNotFoundError: No module named
'pytest_subtests'
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1123531: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1123531
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:toil
Version: 9.1.0-1
Severity: serious
Tags: ftbfs forky sid
Dear maintainer:
During a rebuild of all packages in unstable, this package failed to build.
Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:
https://people.debian.org/~sanvila/build-logs/202512/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:toil, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
[33mSKIPPED[0m [1] toil/test/utils/toilDebugTest.py:255: Install Toil with
the 'wdl' extra to include this test.
[33mSKIPPED[0m [3] toil/test/server/serverTest.py:96: Install Toil with the
'server' extra to include this test.
[33mSKIPPED[0m [1] toil/test/server/serverTest.py:245: Install Toil with the
'server' extra to include this test.
[33mSKIPPED[0m [1] toil/test/jobStores/jobStoreTest.py:1568: Proxy error:
Failed to connect to proxy URL: "http://127.0.0.1:9/";, skipping this test.
[33mSKIPPED[0m [1] toil/test/server/serverTest.py:48: Install Toil with the
'server' extra to include this test.
[31mERROR[0m toil/test/src/importExportFileTest.py - ImportError while
importing test module
'/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_toil/build/toil/test/src/importExportFileTest.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3/dist-packages/_pytest/python.py:507: in importtestmodule
mod = import_path(
/usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path
importlib.import_module(module_name)
/usr/lib/python3.13/importlib/__init__.py:88: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
<frozen importlib._bootstrap>:1387: in _gcd_import
???
<frozen importlib._bootstrap>:1360: in _find_and_load
???
<frozen importlib._bootstrap>:1331: in _find_and_load_unlocked
???
<frozen importlib._bootstrap>:935: in _load_unlocked
???
<frozen importlib._bootstrap_external>:1023: in exec_module
???
<frozen importlib._bootstrap>:488: in _call_with_frames_removed
???
toil/test/src/importExportFileTest.py:30: in <module>
from pytest_subtests import SubTests
E ModuleNotFoundError: No module named 'pytest_subtests'
[31mERROR[0m toil/test/src/jobEncapsulationTest.py - ImportError while
importing test module
'/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_toil/build/toil/test/src/jobEncapsulationTest.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3/dist-packages/_pytest/python.py:507: in importtestmodule
mod = import_path(
/usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path
importlib.import_module(module_name)
/usr/lib/python3.13/importlib/__init__.py:88: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
<frozen importlib._bootstrap>:1387: in _gcd_import
???
<frozen importlib._bootstrap>:1360: in _find_and_load
???
<frozen importlib._bootstrap>:1331: in _find_and_load_unlocked
???
<frozen importlib._bootstrap>:935: in _load_unlocked
???
<frozen importlib._bootstrap_external>:1023: in exec_module
???
<frozen importlib._bootstrap>:488: in _call_with_frames_removed
???
toil/test/src/jobEncapsulationTest.py:17: in <module>
from toil.test.src.jobTest import fn1Test
toil/test/src/jobTest.py:37: in <module>
from pytest_subtests import SubTests
E ModuleNotFoundError: No module named 'pytest_subtests'
[31mERROR[0m toil/test/src/jobTest.py - ImportError while importing test
module
'/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_toil/build/toil/test/src/jobTest.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3/dist-packages/_pytest/python.py:507: in importtestmodule
mod = import_path(
/usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path
importlib.import_module(module_name)
/usr/lib/python3.13/importlib/__init__.py:88: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
<frozen importlib._bootstrap>:1387: in _gcd_import
???
<frozen importlib._bootstrap>:1360: in _find_and_load
???
<frozen importlib._bootstrap>:1331: in _find_and_load_unlocked
???
<frozen importlib._bootstrap>:935: in _load_unlocked
???
<frozen importlib._bootstrap_external>:1023: in exec_module
???
<frozen importlib._bootstrap>:488: in _call_with_frames_removed
???
toil/test/src/jobTest.py:37: in <module>
from pytest_subtests import SubTests
E ModuleNotFoundError: No module named 'pytest_subtests'
[31m== [32m216 passed[0m, [33m159 skipped[0m, [31m[1m3 errors[0m,
[32m24 subtests passed[0m[31m in 523.13s (0:08:43)[0m[31m ==[0m
E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_toil/build; python3.13 -m pytest -n 2
--dist loadscope -vv -W ignore -k "not (testVirtualEnv or DockstoreLookupTest
or testMultiplejobs or testServices)" -m "not slow" --ignore
toil/test/lib/aws/test_s3.py --ignore
toil/test/provisioners/aws/awsProvisionerTest.py --ignore
toil/test/wdl/wdltoil_test.py --ignore toil/test/cwl/cwlTest.py --ignore
toil/test/lib/test_ec2.py --ignore toil/test/batchSystems/batchSystemTest.py
--ignore toil/test/lib/aws/test_iam.py --ignore
toil/test/provisioners/clusterTest.py --ignore
toil/test/wdl/wdltoil_test_kubernetes.py --ignore
toil/test/cactus/test_cactus_integration.py toil/test
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.14
3.13" returned exit code 13
make[1]: *** [debian/rules:38: override_dh_auto_test] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:21: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit
status 2
--------------------------------------------------------------------------------
--- End Message ---
--- Begin Message ---
Source: toil
Source-Version: 9.1.2-1
Done: Michael R. Crusoe <[email protected]>
We believe that the bug you reported is fixed in the latest version of
toil, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael R. Crusoe <[email protected]> (supplier of updated toil package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Thu, 08 Jan 2026 09:36:23 +0100
Source: toil
Architecture: source
Version: 9.1.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Michael R. Crusoe <[email protected]>
Closes: 1123531
Changes:
toil (9.1.2-1) unstable; urgency=medium
.
[ Andreas Tille ]
* Team upload.
* Homepage moved to https://github.com/DataBiosphere/toil
* d/watch: version=5
.
[ Michael R. Crusoe ]
* Accepted patch to use SubTest from pytest 9.0.1+. Closes: #1123531
* New upstream version
* Freshen version patch
* d/rules: skip testing on Python 3.14 until the next toil release
* d/control: bump minimum cwltool version, add two suggestions
(condor, kubernetes)
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Files:
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