Source: r-cran-glmmtmb Version: 1.1.10+dfsg-1 Severity: serious Tags: forky sid X-Debbugs-Cc: Dirk Eddelbuettel <[email protected]> User: [email protected] Usertags: regression
Hi Maintainer r-cran-glmmtmb's autopkgtest fails when tested with r-cran-reformulas 0.4.3-1 [1]. I've copied what I hope is the relevant part of the log below. Regards Graham [1] https://ci.debian.net/packages/r/r-cran-glmmtmb/testing/amd64/ 129s == Failed ====================================================================== 129s -- 1. Error ('test-smooths.R:11:5'): basic smooth ------------------------------ 129s <notSubsettableError/error/condition> 129s Error in `x[[2]]`: object of type 'symbol' is not subsettable 129s Backtrace: 129s x 129s 1. \-glmmTMB::glmmTMB(val ~ s(time), data = ndat, REML = TRUE, start = list(theta = log(sd(ndat$val)))) at test-smooths.R:11:5 129s 2. \-glmmTMB:::mkTMBStruc(...) 129s 3. \-glmmTMB:::getXReTrms(...) 129s 4. \-base::Map(...) 129s 5. \-base::mapply(FUN = f, ..., SIMPLIFY = FALSE) 129s 6. \-glmmTMB (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]]) 129s 7. \-glmmTMB (local) termsfun(f) 129s 8. \-base::eval(substitute(~foo, list(foo = x[[2]]))) 129s 129s -- 2. Error ('test-smooths.R:26:5'): smooth with no fixed-effect components ---- 129s <notSubsettableError/error/condition> 129s Error in `x[[2]]`: object of type 'symbol' is not subsettable 129s Backtrace: 129s x 129s 1. \-glmmTMB::simulate_new(...) at test-smooths.R:26:5 129s 2. \-glmmTMB::glmmTMB(...) 129s 3. \-glmmTMB:::mkTMBStruc(...) 129s 4. \-glmmTMB:::getXReTrms(...) 129s 5. \-base::Map(...) 129s 6. \-base::mapply(FUN = f, ..., SIMPLIFY = FALSE) 129s 7. \-glmmTMB (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]]) 129s 8. \-glmmTMB (local) termsfun(f) 129s 9. \-base::eval(substitute(~foo, list(foo = x[[2]]))) 129s 129s -- 3. Error ('test-smooths.R:48:5'): smooth + diag() specials ------------------ 129s <notSubsettableError/error/condition> 129s Error in `x[[2]]`: object of type 'symbol' is not subsettable 129s Backtrace: 129s x 129s 1. \-glmmTMB::simulate_new(...) at test-smooths.R:48:5 129s 2. \-glmmTMB::glmmTMB(...) 129s 3. \-glmmTMB:::mkTMBStruc(...) 129s 4. \-glmmTMB:::getXReTrms(...) 129s 5. \-base::Map(...) 129s 6. \-base::mapply(FUN = f, ..., SIMPLIFY = FALSE) 129s 7. \-glmmTMB (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]]) 129s 8. \-glmmTMB (local) termsfun(f) 129s 9. \-base::eval(substitute(~foo, list(foo = x[[2]]))) 129s 129s -- 4. Error ('test-smooths.R:68:5'): multiple smooths -------------------------- 129s <notSubsettableError/error/condition> 129s Error in `x[[2]]`: object of type 'symbol' is not subsettable 129s Backtrace: 129s x 129s 1. \-glmmTMB::glmmTMB(y ~ s(x1) + s(x2), data = fake_data) at test-smooths.R:68:5 129s 2. \-glmmTMB:::mkTMBStruc(...) 129s 3. \-glmmTMB:::getXReTrms(...) 129s 4. \-base::Map(...) 129s 5. \-base::mapply(FUN = f, ..., SIMPLIFY = FALSE) 129s 6. \-glmmTMB (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]]) 129s 7. \-glmmTMB (local) termsfun(f) 129s 8. \-base::eval(substitute(~foo, list(foo = x[[2]]))) 129s 129s == DONE ========================================================================
