Your message dated Mon, 22 Dec 2025 14:47:05 +0100
with message-id <[email protected]>
and subject line Re: Bug#1122438: networkx: FTBFS: Extension error!
has caused the Debian Bug report #1122438,
regarding networkx: FTBFS: Extension error!
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
1122438: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1122438
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:networkx
Version: 3.4.2-4
Severity: serious
Tags: ftbfs forky sid

Dear maintainer:

During a rebuild of all packages in unstable, this package failed to build.

Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:

https://people.debian.org/~sanvila/build-logs/202512/

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:networkx, so that this is still
visible in the BTS web page for this package.

Thanks.

--------------------------------------------------------------------------------
[...]
 debian/rules clean
make: pyversions: No such file or directory
py3versions: no X-Python3-Version in control file, using supported versions
py3versions: no X-Python3-Version in control file, using supported versions
dh clean --with python3,sphinxdoc --buildsystem=pybuild
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[1]: pyversions: No such file or directory
py3versions: no X-Python3-Version in control file, using supported versions
py3versions: no X-Python3-Version in control file, using supported versions
dh_auto_clean
# Add here commands to clean up after the build process.
rm -fr build networkx/version.py test.* doc/source/templates/gallery.html 
fontList.cache
# Make sure that there's no .pyc left
find . -name '*.pyc' -exec rm {} ';'

[... snipped ...]

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dumping search index in English (code: en)... done
dumping object inventory... done

Sphinx-Gallery successfully executed 65 out of 74 files subselected by:

    gallery_conf["filename_pattern"] = '/plot'
    gallery_conf["ignore_pattern"]   = '__init__\\.py'

after excluding 0 files that had previously been run (based on MD5).


Extension error!

Versions
========

* Platform:         linux; 
(Linux-6.12.57+deb13-cloud-amd64-x86_64-with-glibc2.42)
* Python version:   3.13.11 (CPython)
* Sphinx version:   8.2.3
* Docutils version: 0.22.3
* Jinja2 version:   3.1.6
* Pygments version: 2.18.0

Last Messages
=============


    copying images... [100%]
    
../debian/python3-networkx/usr/share/doc/python3-networkx/jupyter_execute/c05f8f9c5b006fbf3f7fe3b408fe7ccde823d0edf74b8d8ac89a03c3998682ff.png


    dumping search index in English (code: en)...
    done
    dumping object inventory...
    done
    
Sphinx-Gallery successfully executed 65 out of 74 files subselected by:

    gallery_conf["filename_pattern"] = '/plot'
    gallery_conf["ignore_pattern"]   = '__init__\\.py'

after excluding 0 files that had previously been run (based on MD5).

Loaded Extensions
=================

* sphinx.ext.mathjax (8.2.3)
* alabaster (0.7.16)
* sphinx.ext.autodoc.preserve_defaults (8.2.3)
* sphinx.ext.autodoc.type_comment (8.2.3)
* sphinx.ext.autodoc.typehints (8.2.3)
* sphinx.ext.autodoc (8.2.3)
* sphinx.ext.autosummary (8.2.3)
* sphinx.ext.coverage (8.2.3)
* sphinx.ext.doctest (8.2.3)
* sphinx.ext.todo (8.2.3)
* sphinx.ext.viewcode (8.2.3)
* sphinx_gallery.gen_gallery (0.19.0)
* texext (unknown version)
* numpydoc (1.9.0)
* matplotlib.sphinxext.plot_directive (3.10.7+dfsg1)
* myst_nb (1.3.0)
* pydata_sphinx_theme (unknown version)

Traceback
=========

      File "/usr/lib/python3/dist-packages/sphinx_gallery/gen_gallery.py", line 
1558, in summarize_failing_examples
        raise ExtensionError(fail_message)
    sphinx.errors.ExtensionError: Here is a summary of the problems encountered 
when running the examples:
    
    Unexpected failing examples (9):
    
        ../examples/graphviz_drawing/plot_grid.py failed leaving traceback:
    
        Traceback (most recent call last):
          File "/<<PKGBUILDDIR>>/examples/graphviz_drawing/plot_grid.py", line 
24, in <module>
            A.draw("5x5.png", prog="neato")
            ~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^
          File "pygraphviz/agraph.py", line 1608, in draw
            data = self._run_prog(prog, args)
          File "pygraphviz/agraph.py", line 1400, in _run_prog
            raise OSError(b"".join(errors).decode(self.encoding))
        OSError: There is no layout engine support for "neato"
         Use one of: dot
    
    
        ../examples/graphviz_layout/plot_decomposition.py failed leaving 
traceback:
    
        Traceback (most recent call last):
          File 
"/<<PKGBUILDDIR>>/examples/graphviz_layout/plot_decomposition.py", line 25, in 
<module>
            pos = nx.nx_agraph.graphviz_layout(B, prog="neato")
          File "/<<PKGBUILDDIR>>/networkx/drawing/nx_agraph.py", line 257, in 
graphviz_layout
            return pygraphviz_layout(G, prog=prog, root=root, args=args)
          File "/<<PKGBUILDDIR>>/networkx/drawing/nx_agraph.py", line 307, in 
pygraphviz_layout
            A.layout(prog=prog, args=args)
            ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^
          File "pygraphviz/agraph.py", line 1479, in layout
            data = self._run_prog(prog, " ".join([args, "-T", output_fmt]))
          File "pygraphviz/agraph.py", line 1400, in _run_prog
            raise OSError(b"".join(errors).decode(self.encoding))
        OSError: There is no layout engine support for "neato"
         Use one of: dot
    
    
        ../examples/graphviz_layout/plot_atlas.py failed leaving traceback:
    
        Traceback (most recent call last):
          File "/<<PKGBUILDDIR>>/examples/graphviz_layout/plot_atlas.py", line 
45, in <module>
            pos = nx.nx_agraph.graphviz_layout(G, prog="neato")
          File "/<<PKGBUILDDIR>>/networkx/drawing/nx_agraph.py", line 257, in 
graphviz_layout
            return pygraphviz_layout(G, prog=prog, root=root, args=args)
          File "/<<PKGBUILDDIR>>/networkx/drawing/nx_agraph.py", line 307, in 
pygraphviz_layout
            A.layout(prog=prog, args=args)
            ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^
          File "pygraphviz/agraph.py", line 1479, in layout
            data = self._run_prog(prog, " ".join([args, "-T", output_fmt]))
          File "pygraphviz/agraph.py", line 1400, in _run_prog
            raise OSError(b"".join(errors).decode(self.encoding))
        OSError: There is no layout engine support for "neato"
         Use one of: dot
    
    
        ../examples/graphviz_drawing/plot_attributes.py failed leaving 
traceback:
    
        Traceback (most recent call last):
          File "/<<PKGBUILDDIR>>/examples/graphviz_drawing/plot_attributes.py", 
line 18, in <module>
            A.draw("attributes.png", prog="neato")  # Draw with pygraphviz
            ~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
          File "pygraphviz/agraph.py", line 1608, in draw
            data = self._run_prog(prog, args)
          File "pygraphviz/agraph.py", line 1400, in _run_prog
            raise OSError(b"".join(errors).decode(self.encoding))
        OSError: There is no layout engine support for "neato"
         Use one of: dot
    
    
        ../examples/graphviz_layout/plot_giant_component.py failed leaving 
traceback:
    
        Traceback (most recent call last):
          File 
"/<<PKGBUILDDIR>>/examples/graphviz_layout/plot_giant_component.py", line 37, 
in <module>
            pos = nx.nx_agraph.graphviz_layout(G)
          File "/<<PKGBUILDDIR>>/networkx/drawing/nx_agraph.py", line 257, in 
graphviz_layout
            return pygraphviz_layout(G, prog=prog, root=root, args=args)
          File "/<<PKGBUILDDIR>>/networkx/drawing/nx_agraph.py", line 307, in 
pygraphviz_layout
            A.layout(prog=prog, args=args)
            ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^
          File "pygraphviz/agraph.py", line 1479, in layout
            data = self._run_prog(prog, " ".join([args, "-T", output_fmt]))
          File "pygraphviz/agraph.py", line 1400, in _run_prog
            raise OSError(b"".join(errors).decode(self.encoding))
        OSError: There is no layout engine support for "neato"
         Use one of: dot
    
    
        ../examples/graphviz_layout/plot_lanl_routes.py failed leaving 
traceback:
    
        Traceback (most recent call last):
          File "/<<PKGBUILDDIR>>/examples/graphviz_layout/plot_lanl_routes.py", 
line 53, in <module>
            pos = nx.nx_agraph.graphviz_layout(G, prog="twopi", root=0)
          File "/<<PKGBUILDDIR>>/networkx/drawing/nx_agraph.py", line 257, in 
graphviz_layout
            return pygraphviz_layout(G, prog=prog, root=root, args=args)
          File "/<<PKGBUILDDIR>>/networkx/drawing/nx_agraph.py", line 307, in 
pygraphviz_layout
            A.layout(prog=prog, args=args)
            ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^
          File "pygraphviz/agraph.py", line 1479, in layout
            data = self._run_prog(prog, " ".join([args, "-T", output_fmt]))
          File "pygraphviz/agraph.py", line 1400, in _run_prog
            raise OSError(b"".join(errors).decode(self.encoding))
        OSError: There is no layout engine support for "twopi"
         Use one of: dot
    
    
        ../examples/graphviz_layout/plot_circular_tree.py failed leaving 
traceback:
    
        Traceback (most recent call last):
          File 
"/<<PKGBUILDDIR>>/examples/graphviz_layout/plot_circular_tree.py", line 13, in 
<module>
            pos = nx.nx_agraph.graphviz_layout(G, prog="twopi", args="")
          File "/<<PKGBUILDDIR>>/networkx/drawing/nx_agraph.py", line 257, in 
graphviz_layout
            return pygraphviz_layout(G, prog=prog, root=root, args=args)
          File "/<<PKGBUILDDIR>>/networkx/drawing/nx_agraph.py", line 307, in 
pygraphviz_layout
            A.layout(prog=prog, args=args)
            ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^
          File "pygraphviz/agraph.py", line 1479, in layout
            data = self._run_prog(prog, " ".join([args, "-T", output_fmt]))
          File "pygraphviz/agraph.py", line 1400, in _run_prog
            raise OSError(b"".join(errors).decode(self.encoding))
        OSError: There is no layout engine support for "twopi"
         Use one of: dot
    
    
        ../examples/graphviz_drawing/plot_mini_atlas.py failed leaving 
traceback:
    
        Traceback (most recent call last):
          File "/<<PKGBUILDDIR>>/examples/graphviz_drawing/plot_mini_atlas.py", 
line 26, in <module>
            A.draw("A20.png", prog="neato")
            ~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^
          File "pygraphviz/agraph.py", line 1608, in draw
            data = self._run_prog(prog, args)
          File "pygraphviz/agraph.py", line 1400, in _run_prog
            raise OSError(b"".join(errors).decode(self.encoding))
        OSError: There is no layout engine support for "neato"
         Use one of: dot
    
    
        ../examples/graphviz_drawing/plot_conversion.py failed leaving 
traceback:
    
        Traceback (most recent call last):
          File "/<<PKGBUILDDIR>>/examples/graphviz_drawing/plot_conversion.py", 
line 21, in <module>
            A.draw("k5.png", prog="neato")
            ~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^
          File "pygraphviz/agraph.py", line 1608, in draw
            data = self._run_prog(prog, args)
          File "pygraphviz/agraph.py", line 1400, in _run_prog
            raise OSError(b"".join(errors).decode(self.encoding))
        OSError: There is no layout engine support for "neato"
         Use one of: dot
    
    
    
-------------------------------------------------------------------------------


The full traceback has been saved in:
/tmp/sphinx-err-3346csr1.log

To report this error to the developers, please open an issue at 
<https://github.com/sphinx-doc/sphinx/issues/>. Thanks!
Please also report this if it was a user error, so that a better error message 
can be provided next time.
make[1]: *** [debian/rules:49: override_dh_sphinxdoc] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:15: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------

--- End Message ---
--- Begin Message ---
On 12/10/25 9:39 PM, Santiago Vila wrote:
Package: src:networkx
Version: 3.4.2-4
Severity: serious
Tags: ftbfs forky sid

Dear maintainer:

During a rebuild of all packages in unstable, this package failed to build.

Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:

https://people.debian.org/~sanvila/build-logs/202512/

Hi Santiago,

Looks like the bug was in one of the build-depends of networkx: I could reproduce the issue a few days ago, but now I can't, meaning that the wrong build-dependency was probably fixed, somehow.

Cheers,

Thomas Goirand (zigo)

--- End Message ---

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