Package: src:python-pynndescent Version: 0.5.13-1 Severity: serious Tags: ftbfs forky sid
Dear maintainer: During a rebuild of all packages in unstable, this package failed to build. Below you will find the last part of the build log (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202512/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you cannot reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:python-pynndescent, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:317: python3.14 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_pynndescent/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.14' does not exist -- can't clean it I: pybuild base:317: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pynndescent/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:317: python3.14 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config I: pybuild base:317: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config debian/rules override_dh_auto_build make[1]: Entering directory '/<<PKGBUILDDIR>>' sed -i "s/^__version__.*/__version__ = '0.5.13'/" pynndescent/__init__.py dh_auto_build I: pybuild base:317: /usr/bin/python3.14 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_pynndescent/build/pynndescent copying pynndescent/sparse_nndescent.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_pynndescent/build/pynndescent copying pynndescent/graph_utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_pynndescent/build/pynndescent copying pynndescent/pynndescent_.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_pynndescent/build/pynndescent copying pynndescent/threaded_rp_trees.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_pynndescent/build/pynndescent copying pynndescent/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_pynndescent/build/pynndescent copying pynndescent/optimal_transport.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_pynndescent/build/pynndescent copying pynndescent/sparse.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_pynndescent/build/pynndescent copying pynndescent/rp_trees.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_pynndescent/build/pynndescent copying pynndescent/distances.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_pynndescent/build/pynndescent copying pynndescent/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_pynndescent/build/pynndescent I: pybuild base:317: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pynndescent/build/pynndescent copying pynndescent/sparse_nndescent.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pynndescent/build/pynndescent copying pynndescent/graph_utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pynndescent/build/pynndescent copying pynndescent/pynndescent_.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pynndescent/build/pynndescent copying pynndescent/threaded_rp_trees.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pynndescent/build/pynndescent copying pynndescent/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pynndescent/build/pynndescent copying pynndescent/optimal_transport.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pynndescent/build/pynndescent copying pynndescent/sparse.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pynndescent/build/pynndescent copying pynndescent/rp_trees.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pynndescent/build/pynndescent copying pynndescent/distances.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pynndescent/build/pynndescent copying pynndescent/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pynndescent/build/pynndescent make[1]: Leaving directory '/<<PKGBUILDDIR>>' debian/rules override_dh_auto_test make[1]: Entering directory '/<<PKGBUILDDIR>>' dh_auto_test -- --system=custom --test-args="PYTHONPATH={build_dir} {interpreter} -m pytest -v /<<PKGBUILDDIR>>/pynndescent/tests" I: pybuild base:317: PYTHONPATH=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_pynndescent/build python3.14 -m pytest -v /<<PKGBUILDDIR>>/pynndescent/tests ImportError while loading conftest '/<<PKGBUILDDIR>>/pynndescent/tests/conftest.py'. pynndescent/__init__.py:3: in <module> import numba /usr/lib/python3/dist-packages/numba/__init__.py:77: in <module> from numba.misc.special import ( /usr/lib/python3/dist-packages/numba/misc/special.py:3: in <module> from numba.core.typing.typeof import typeof /usr/lib/python3/dist-packages/numba/core/typing/__init__.py:1: in <module> from .context import BaseContext, Context /usr/lib/python3/dist-packages/numba/core/typing/context.py:10: in <module> from numba.core.typeconv import Conversion, rules /usr/lib/python3/dist-packages/numba/core/typeconv/rules.py:2: in <module> from .typeconv import TypeManager, TypeCastingRules /usr/lib/python3/dist-packages/numba/core/typeconv/typeconv.py:16: in <module> raise ImportError(msg) E ImportError: Numba could not be imported. E -------------------------------------------------------------------------------- E If you are seeing this message and are undertaking Numba development work, you may need to rebuild Numba. E Please see the development set up guide: E E https://numba.readthedocs.io/en/stable/developer/contributing.html. E E -------------------------------------------------------------------------------- E If you are not working on Numba development, the original error was: 'cannot import name '_typeconv' from 'numba.core.typeconv' (/usr/lib/python3/dist-packages/numba/core/typeconv/__init__.py)'. E For help, please visit: E E https://numba.readthedocs.io/en/stable/user/faq.html#numba-could-not-be-imported E: pybuild pybuild:389: test: plugin custom failed with: exit code=4: PYTHONPATH=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_pynndescent/build python3.14 -m pytest -v /<<PKGBUILDDIR>>/pynndescent/tests I: pybuild base:317: PYTHONPATH=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pynndescent/build python3.13 -m pytest -v /<<PKGBUILDDIR>>/pynndescent/tests ============================= test session starts ============================== platform linux -- Python 3.13.11, pytest-9.0.2, pluggy-1.6.0 -- /usr/bin/python3.13 cachedir: .pytest_cache rootdir: /<<PKGBUILDDIR>> plugins: typeguard-4.4.4 collecting ... collected 147 items pynndescent/tests/test_distances.py::test_spatial_check[euclidean] PASSED [ 0%] pynndescent/tests/test_distances.py::test_spatial_check[manhattan] PASSED [ 1%] pynndescent/tests/test_distances.py::test_spatial_check[chebyshev] PASSED [ 2%] 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pynndescent/tests/test_distances.py::test_sparse_binary_check[jaccard] PASSED [ 18%] pynndescent/tests/test_distances.py::test_sparse_binary_check[matching] PASSED [ 19%] pynndescent/tests/test_distances.py::test_sparse_binary_check[dice] PASSED [ 19%] pynndescent/tests/test_distances.py::test_sparse_binary_check[rogerstanimoto] PASSED [ 20%] pynndescent/tests/test_distances.py::test_sparse_binary_check[russellrao] PASSED [ 21%] pynndescent/tests/test_distances.py::test_sparse_binary_check[sokalmichener] PASSED [ 21%] pynndescent/tests/test_distances.py::test_sparse_binary_check[sokalsneath] PASSED [ 22%] pynndescent/tests/test_distances.py::test_seuclidean PASSED [ 23%] pynndescent/tests/test_distances.py::test_weighted_minkowski SKIPPED [ 23%] pynndescent/tests/test_distances.py::test_mahalanobis PASSED [ 24%] pynndescent/tests/test_distances.py::test_haversine PASSED [ 25%] pynndescent/tests/test_distances.py::test_spearmanr PASSED [ 25%] 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pynndescent/tests/test_pynndescent_.py::test_tree_numbers_after_multiple_updates[3] PASSED [ 69%] pynndescent/tests/test_pynndescent_.py::test_tree_numbers_after_multiple_updates[10] PASSED [ 70%] pynndescent/tests/test_pynndescent_.py::test_tree_init_false[euclidean] PASSED [ 70%] pynndescent/tests/test_pynndescent_.py::test_tree_init_false[cosine] PASSED [ 71%] pynndescent/tests/test_pynndescent_.py::test_one_dimensional_data[euclidean] PASSED [ 72%] pynndescent/tests/test_pynndescent_.py::test_one_dimensional_data[manhattan] PASSED [ 72%] pynndescent/tests/test_pynndescent_.py::test_tree_no_split[euclidean] PASSED [ 73%] pynndescent/tests/test_pynndescent_.py::test_tree_no_split[cosine] PASSED [ 74%] pynndescent/tests/test_pynndescent_.py::test_bad_data PASSED [ 74%] pynndescent/tests/test_rank.py::test_empty PASSED [ 75%] pynndescent/tests/test_rank.py::test_one PASSED [ 76%] pynndescent/tests/test_rank.py::test_basic PASSED [ 76%] pynndescent/tests/test_rank.py::test_rankdata_object_string PASSED [ 77%] pynndescent/tests/test_rank.py::test_large_int PASSED [ 78%] pynndescent/tests/test_rank.py::test_big_tie PASSED [ 78%] pynndescent/tests/test_rank.py::test_cases[values0-average-expected0] PASSED [ 79%] pynndescent/tests/test_rank.py::test_cases[values1-min-expected1] PASSED [ 80%] pynndescent/tests/test_rank.py::test_cases[values2-max-expected2] PASSED [ 80%] pynndescent/tests/test_rank.py::test_cases[values3-dense-expected3] PASSED [ 81%] pynndescent/tests/test_rank.py::test_cases[values4-ordinal-expected4] PASSED [ 82%] pynndescent/tests/test_rank.py::test_cases[values5-average-expected5] PASSED [ 82%] pynndescent/tests/test_rank.py::test_cases[values6-min-expected6] PASSED [ 83%] pynndescent/tests/test_rank.py::test_cases[values7-max-expected7] PASSED [ 84%] pynndescent/tests/test_rank.py::test_cases[values8-dense-expected8] PASSED [ 85%] pynndescent/tests/test_rank.py::test_cases[values9-ordinal-expected9] PASSED [ 85%] pynndescent/tests/test_rank.py::test_cases[values10-average-expected10] PASSED [ 86%] pynndescent/tests/test_rank.py::test_cases[values11-min-expected11] PASSED [ 87%] pynndescent/tests/test_rank.py::test_cases[values12-max-expected12] PASSED [ 87%] pynndescent/tests/test_rank.py::test_cases[values13-dense-expected13] PASSED [ 88%] pynndescent/tests/test_rank.py::test_cases[values14-ordinal-expected14] PASSED [ 89%] pynndescent/tests/test_rank.py::test_cases[values15-average-expected15] PASSED [ 89%] pynndescent/tests/test_rank.py::test_cases[values16-min-expected16] PASSED [ 90%] pynndescent/tests/test_rank.py::test_cases[values17-max-expected17] PASSED [ 91%] pynndescent/tests/test_rank.py::test_cases[values18-dense-expected18] PASSED [ 91%] pynndescent/tests/test_rank.py::test_cases[values19-ordinal-expected19] PASSED [ 92%] pynndescent/tests/test_rank.py::test_cases[values20-average-expected20] PASSED [ 93%] pynndescent/tests/test_rank.py::test_cases[values21-min-expected21] PASSED [ 93%] pynndescent/tests/test_rank.py::test_cases[values22-max-expected22] PASSED [ 94%] pynndescent/tests/test_rank.py::test_cases[values23-dense-expected23] PASSED [ 95%] pynndescent/tests/test_rank.py::test_cases[values24-ordinal-expected24] PASSED [ 95%] pynndescent/tests/test_rank.py::test_cases[values25-average-expected25] PASSED [ 96%] pynndescent/tests/test_rank.py::test_cases[values26-min-expected26] PASSED [ 97%] pynndescent/tests/test_rank.py::test_cases[values27-max-expected27] PASSED [ 97%] pynndescent/tests/test_rank.py::test_cases[values28-dense-expected28] PASSED [ 98%] pynndescent/tests/test_rank.py::test_cases[values29-ordinal-expected29] PASSED [ 99%] pynndescent/tests/test_rank.py::test_cases[values30-ordinal-expected30] PASSED [100%] =============================== warnings summary =============================== pynndescent/tests/test_distances.py::test_binary_check[sokalmichener] pynndescent/tests/test_distances.py::test_sparse_binary_check[sokalmichener] /usr/lib/python3/dist-packages/scipy/spatial/distance.py:2338: DeprecationWarning: The sokalmichener metric is deprecated since SciPy 1.15.0 and will be removed in SciPy 1.17.0. Replace usage of 'sokalmichener(u, v)' with 'rogerstanimoto(u, v)'. return pdist_fn(X, out=out, **kwargs) pynndescent/tests/test_distances.py::test_bit_jaccard pynndescent/tests/test_pynndescent_.py::test_bitpacked_nn_descent_neighbor_accuracy pynndescent/tests/test_pynndescent_.py::test_bitpacked_nn_descent_query_accuracy /usr/lib/python3/dist-packages/sklearn/metrics/pairwise.py:2462: DataConversionWarning: Data was converted to boolean for metric jaccard warnings.warn(msg, DataConversionWarning) pynndescent/tests/test_pynndescent_.py::test_bitpacked_nn_descent_neighbor_accuracy pynndescent/tests/test_pynndescent_.py::test_bitpacked_nn_descent_query_accuracy /<<PKGBUILDDIR>>/pynndescent/pynndescent_.py:939: UserWarning: Failed to correctly find n_neighbors for some samples. Results may be less than ideal. Try re-running with different parameters. warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ============ 146 passed, 1 skipped, 7 warnings in 135.28s (0:02:15) ============ dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.14 3.13" --system=custom --test-args="PYTHONPATH={build_dir} {interpreter} -m pytest -v /<<PKGBUILDDIR>>/pynndescent/tests" returned exit code 13 make[1]: *** [debian/rules:18: override_dh_auto_test] Error 25 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:9: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 --------------------------------------------------------------------------------
