Your message dated Thu, 11 Dec 2025 21:58:16 +0000
with message-id <[email protected]>
and subject line Bug#1122457: fixed in pybigwig 0.3.23+dfsg-2
has caused the Debian Bug report #1122457,
regarding libbigwig0t64 is empty
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1122457: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1122457
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: pybigwig
Version: 0.3.23+dfsg-1
Severity: serious
Tags: ftbfs
User: [email protected]
Usertags: python3.14
Hi Maintainer
pybigwig FTBFS (only on amd64) when built with Python 3.14 as a
supported version [1]. I've copied what I hope is the relevant part
of the log below.
Regards
Graham
[1] https://buildd.debian.org/status/package.php?p=pybigwig
creating build/temp.linux-x86_64-cpython-313
x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/build/reproducible-path/pybigwig-0.3.23+dfsg=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time
-D_FORTIFY_SOURCE=2 -fPIC -DWITHNUMPY
-DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -IlibBigWig
-I/usr/include/python3.13
-I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include
-I/usr/include/python3.13 -c pyBigWig.c -o
build/temp.linux-x86_64-cpython-313/pyBigWig.o
pyBigWig.c: In function ‘PyString_AsString’:
pyBigWig.c:773:12: warning: return discards ‘const’ qualifier from
pointer target type [-Wdiscarded-qualifiers]
773 | return PyUnicode_AsUTF8(obj);
| ^~~~~~~~~~~~~~~~~~~~~
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions
-Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2
-Werror=implicit-function-declaration
-ffile-prefix-map=/build/reproducible-path/pybigwig-0.3.23+dfsg=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time
-D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/pyBigWig.o
-L/usr/lib/x86_64-linux-gnu
-L/usr/lib/python3.13/config-3.13-x86_64-linux-gnu
-L/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/../lib
-L/usr/lib/x86_64-linux-gnu -lBigWig -lm -lz -lpython3.13 -lcurl
-lnpymath -o
build/lib.linux-x86_64-cpython-313/pyBigWig.cpython-313-x86_64-linux-gnu.so
/usr/bin/ld: /usr/lib/x86_64-linux-gnu/libBigWig.a(io.o): warning:
relocation against `stderr@@GLIBC_2.2.5' in read-only section `.text'
/usr/bin/ld: /usr/lib/x86_64-linux-gnu/libBigWig.a(bwValues.o):
relocation R_X86_64_PC32 against symbol `stderr@@GLIBC_2.2.5' can not
be used when making a shared object; recompile with -fPIC
/usr/bin/ld: final link failed: bad value
collect2: error: ld returned 1 exit status
error: command '/usr/bin/x86_64-linux-gnu-gcc' failed with exit code 1
--- End Message ---
--- Begin Message ---
Source: pybigwig
Source-Version: 0.3.23+dfsg-2
Done: Stuart Prescott <[email protected]>
We believe that the bug you reported is fixed in the latest version of
pybigwig, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Stuart Prescott <[email protected]> (supplier of updated pybigwig package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 12 Dec 2025 08:18:31 +1100
Source: pybigwig
Architecture: source
Version: 0.3.23+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Stuart Prescott <[email protected]>
Closes: 1122457
Changes:
pybigwig (0.3.23+dfsg-2) unstable; urgency=medium
.
* Team upload.
* Build against fixed libbigwig0t64 (Closes: #1122457).
* Update Standards-Version to 4.7.2 (no changes required).
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