Your message dated Wed, 5 Nov 2025 11:07:27 +0100
with message-id <[email protected]>
and subject line Re: toppic: FTBFS: error: redefinition of 'std::string
boost::filesystem::extension(const path&)'
has caused the Debian Bug report #1115146,
regarding toppic: FTBFS: error: redefinition of 'std::string
boost::filesystem::extension(const path&)'
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1115146: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1115146
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:toppic
Version: 1.5.3+dfsg1-1
Severity: serious
Tags: ftbfs forky sid
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build.
Below you will find how the build ends (probably the most relevant part,
but not necessarily). If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202509/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:toppic, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean --buildsystem=cmake
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -f debian/topfd.1
rm -f debian/toppic.1
rm -f debian/topmg.1
rm -f debian/topdiff.1
dh_clean
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/toppic.substvars debian/toppic-common.substvars
debian/files
rm -fr -- debian/toppic/ debian/tmp/ debian/toppic-common/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path
.\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o
-type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
[... snipped ...]
AutoGen: Parsing "SRC:/src/common/util/file_util.cpp"
AutoGen: Parsing "SRC:/src/common/util/logger.cpp"
AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp"
AutoGen: Parsing "SRC:/src/common/util/str_util.cpp"
AutoGen: Parsing "SRC:/src/common/util/time_util.cpp"
AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp"
AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp"
AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp"
AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp"
AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp"
AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp"
AutoGen: Parsing "SRC:/src/console/topconvert.cpp"
AutoGen: Parsing "SRC:/src/console/topconvert_process.cpp"
AutoGen: Parsing "SRC:/src/console/toppic_argument.cpp"
AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp"
AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp"
AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp"
AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp"
AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp"
AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp"
AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp"
AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp"
AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp"
AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp"
AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp"
AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp"
AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp"
AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp"
AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp"
AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp"
AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp"
AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp"
AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp"
AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp"
AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp"
AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp"
AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp"
AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp"
AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp"
AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp"
AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp"
AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp"
AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp"
AutoMoc: Reading dependencies from
"SRC:/obj-x86_64-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/moc_topmergedialog.cpp.d"
AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp"
AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp"
AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp"
AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp"
AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp"
AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp"
AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp"
AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp"
AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp"
AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp"
AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp"
AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp"
AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp"
AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp"
AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp"
AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp"
AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp"
AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp"
AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp"
AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp"
AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp"
AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp"
AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp"
AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp"
AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp"
AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp"
AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp"
AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp"
AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp"
AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp"
AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp"
AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp"
AutoGen: Parsing "SRC:/src/para/prsm_para.cpp"
AutoGen: Parsing "SRC:/src/para/sp_para.cpp"
AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp"
AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp"
AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp"
AutoGen: Parsing "SRC:/src/prsm/prsm.cpp"
AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp"
AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp"
AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp"
AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp"
AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp"
AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp"
AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp"
AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp"
AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp"
AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp"
AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp"
AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp"
AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp"
AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp"
AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp"
AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp"
AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp"
AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp"
AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp"
AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp"
AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp"
AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp"
AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp"
AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp"
AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp"
AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp"
AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp"
AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp"
AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp"
AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp"
AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp"
AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp"
AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp"
AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp"
AutoGen: Parsing "SRC:/src/seq/alter.cpp"
AutoGen: Parsing "SRC:/src/seq/alter_type.cpp"
AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp"
AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp"
AutoGen: Parsing "SRC:/src/seq/break_point.cpp"
AutoGen: Parsing "SRC:/src/seq/db_block.cpp"
AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp"
AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp"
AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp"
AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp"
AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp"
AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp"
AutoGen: Parsing "SRC:/src/seq/local_anno.cpp"
AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp"
AutoGen: Parsing "SRC:/src/seq/proteoform.cpp"
AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp"
AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp"
AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp"
AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp"
AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp"
AutoMoc: Generating MOC compilation
"SRC:/obj-x86_64-linux-gnu/topmerge_gui_autogen/mocs_compilation.cpp"
AutoMoc: Generating MOC compilation
"SRC:/obj-x86_64-linux-gnu/topconvert_autogen/mocs_compilation.cpp"
AutoMoc: Merging MOC dependencies into
"SRC:/obj-x86_64-linux-gnu/topconvert_autogen/deps"
AutoMoc: Merging MOC dependencies into
"SRC:/obj-x86_64-linux-gnu/topmerge_gui_autogen/deps"
AutoGen: Writing the parse cache file
"SRC:/obj-x86_64-linux-gnu/CMakeFiles/topconvert_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file
"SRC:/obj-x86_64-linux-gnu/CMakeFiles/topconvert_autogen.dir/AutogenUsed.txt"
AutoGen: Writing the parse cache file
"SRC:/obj-x86_64-linux-gnu/CMakeFiles/topmerge_gui_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file
"SRC:/obj-x86_64-linux-gnu/CMakeFiles/topmerge_gui_autogen.dir/AutogenUsed.txt"
/usr/bin/cmake -E touch
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/topconvert_autogen/timestamp
/usr/bin/cmake -E touch
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/topmerge_gui_autogen/timestamp
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 1%] Built target topmerge_gui_autogen
[ 1%] Built target topconvert_autogen
make -f CMakeFiles/topfd.dir/build.make CMakeFiles/topfd.dir/depend
make -f CMakeFiles/topfd_gui.dir/build.make CMakeFiles/topfd_gui.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends
"Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/topfd.dir/DependInfo.cmake
"--color="
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 1%] Automatic RCC for src/gui/topfd/icon.qrc
Dependencies file "topfd_autogen/deps" is newer than depends file
"/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/topfd.dir/compiler_depend.internal".
/usr/bin/cmake -E cmake_autorcc
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/AutoRcc_icon_HZKSH7CGSX_Info.json
release
Consolidate compiler generated dependencies of target topfd
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f CMakeFiles/topfd.dir/build.make CMakeFiles/topfd.dir/build
AutoRcc: Generating
"SRC:/obj-x86_64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp", because
it doesn't exist, from "SRC:/src/gui/topfd/icon.qrc"
/usr/lib/qt5/bin/rcc -name icon -o
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp
/<<PKGBUILDDIR>>/src/gui/topfd/icon.qrc
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
AutoRcc: Writing settings file
"SRC:/obj-x86_64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/AutoRcc_icon_HZKSH7CGSX_Used.txt"
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends
"Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/topfd_gui.dir/DependInfo.cmake
"--color="
[ 1%] Building CXX object
CMakeFiles/topfd.dir/topfd_autogen/mocs_compilation.cpp.o
/usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<P
[too-long-redacted] fd_autogen/mocs_compilation.cpp
Dependencies file "topfd_gui_autogen/deps" is newer than depends file
"/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/topfd_gui.dir/compiler_depend.internal".
Consolidate compiler generated dependencies of target topfd_gui
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f CMakeFiles/topfd_gui.dir/build.make CMakeFiles/topfd_gui.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 1%] Building CXX object CMakeFiles/topfd.dir/src/console/topfd.cpp.o
/usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<P
[too-long-redacted] UILDDIR>>/src/console/topfd.cpp
[ 1%] Building CXX object
CMakeFiles/topfd_gui.dir/topfd_gui_autogen/mocs_compilation.cpp.o
/usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<P
[too-long-redacted] ui_autogen/mocs_compilation.cpp
[ 1%] Building CXX object
CMakeFiles/topfd_gui.dir/src/gui/topfd/threadtopfd.cpp.o
/usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<P
[too-long-redacted] >/src/gui/topfd/threadtopfd.cpp
[ 1%] Building CXX object CMakeFiles/topfd.dir/src/console/topfd_argument.cpp.o
/usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<P
[too-long-redacted] /src/console/topfd_argument.cpp
[ 1%] Building CXX object
CMakeFiles/topfd_gui.dir/src/gui/topfd/topfd_gui.cpp.o
/usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<P
[too-long-redacted] R>>/src/gui/topfd/topfd_gui.cpp
/<<PKGBUILDDIR>>/src/gui/topfd/topfd_gui.cpp: In function âint main(int,
char**)â:
/<<PKGBUILDDIR>>/src/gui/topfd/topfd_gui.cpp:40:43: warning: âconst QRect
QDesktopWidget::availableGeometry(int) constâ is deprecated: Use
QGuiApplication::screens() [-Wdeprecated-declarations]
40 | QRect deskRect = desk->availableGeometry();
| ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from
/usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDesktopWidget:1,
from /<<PKGBUILDDIR>>/src/gui/topfd/topfd_gui.cpp:18:
/usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note:
declared here
88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect
availableGeometry(int screen = -1) const;
|
^~~~~~~~~~~~~~~~~
[ 1%] Building CXX object
CMakeFiles/topfd_gui.dir/src/gui/topfd/topfddialog.cpp.o
/usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<P
[too-long-redacted] >/src/gui/topfd/topfddialog.cpp
[ 1%] Building CXX object
CMakeFiles/topfd.dir/src/topfd/common/topfd_para.cpp.o
/usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<P
[too-long-redacted] src/topfd/common/topfd_para.cpp
[ 1%] Building CXX object
CMakeFiles/topfd.dir/src/topfd/common/topfd_process.cpp.o
/usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<P
[too-long-redacted] /topfd/common/topfd_process.cpp
[ 1%] Building CXX object
CMakeFiles/topfd_gui.dir/src/topfd/common/topfd_para.cpp.o
/usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<P
[too-long-redacted] src/topfd/common/topfd_para.cpp
[ 1%] Building CXX object
CMakeFiles/topfd_gui.dir/src/topfd/common/topfd_process.cpp.o
/usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<P
[too-long-redacted] /topfd/common/topfd_process.cpp
[ 1%] Building CXX object
CMakeFiles/topfd.dir/src/topfd/deconv/deconv_one_sp.cpp.o
/usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<P
[too-long-redacted] /topfd/deconv/deconv_one_sp.cpp
[ 1%] Building CXX object
CMakeFiles/topfd_gui.dir/src/topfd/deconv/deconv_one_sp.cpp.o
/usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<P
[too-long-redacted] /topfd/deconv/deconv_one_sp.cpp
[ 1%] Building CXX object
CMakeFiles/topfd.dir/src/topfd/deconv/deconv_process.cpp.o
/usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<P
[too-long-redacted] topfd/deconv/deconv_process.cpp
[ 1%] Building CXX object
CMakeFiles/topfd_gui.dir/src/topfd/deconv/deconv_process.cpp.o
/usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<P
[too-long-redacted] topfd/deconv/deconv_process.cpp
In file included from /<<PKGBUILDDIR>>/src/topfd/msreader/pw_ms_reader.hpp:25,
from
/<<PKGBUILDDIR>>/src/topfd/msreader/raw_ms_group_reader.hpp:19,
from /<<PKGBUILDDIR>>/src/topfd/deconv/deconv_process.hpp:25,
from /<<PKGBUILDDIR>>/src/topfd/deconv/deconv_process.cpp:37:
/usr/include/pwizlite/pwiz/utility/misc/Filesystem.hpp:75:24: error:
redefinition of âstd::string boost::filesystem::extension(const path&)â
75 | inline std::string extension(const path& p)
| ^~~~~~~~~
In file included from /usr/include/boost/filesystem.hpp:21,
from /<<PKGBUILDDIR>>/src/topfd/deconv/deconv_process.cpp:17:
/usr/include/boost/filesystem/convenience.hpp:29:20: note: âstd::string
boost::filesystem::extension(const path&)â previously defined here
29 | inline std::string extension(const path& p)
| ^~~~~~~~~
/usr/include/pwizlite/pwiz/utility/misc/Filesystem.hpp:80:24: error:
redefinition of âstd::string boost::filesystem::basename(const path&)â
80 | inline std::string basename(const path& p)
| ^~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: âstd::string
boost::filesystem::basename(const path&)â previously defined here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/usr/include/pwizlite/pwiz/utility/misc/Filesystem.hpp:85:17: error:
redefinition of âboost::filesystem::path
boost::filesystem::change_extension(const path&, const path&)â
85 | inline path change_extension(const path& p, const path&
new_extension)
| ^~~~~~~~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:41:13: note:
âboost::filesystem::path boost::filesystem::change_extension(const path&,
const path&)â previously defined here
41 | inline path change_extension(const path& p, const path& new_extension)
| ^~~~~~~~~~~~~~~~
make[3]: *** [CMakeFiles/topfd.dir/build.make:173:
CMakeFiles/topfd.dir/src/topfd/deconv/deconv_process.cpp.o] Error 1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make[2]: *** [CMakeFiles/Makefile2:153: CMakeFiles/topfd.dir/all] Error 2
make[2]: *** Waiting for unfinished jobs....
[ 1%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/dp/co_table.cpp.o
/usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<P
[too-long-redacted] DIR>>/src/topfd/dp/co_table.cpp
[ 1%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/dp/dp.cpp.o
/usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<P
[too-long-redacted] GBUILDDIR>>/src/topfd/dp/dp.cpp
In file included from /<<PKGBUILDDIR>>/src/topfd/msreader/pw_ms_reader.hpp:25,
from
/<<PKGBUILDDIR>>/src/topfd/msreader/raw_ms_group_reader.hpp:19,
from /<<PKGBUILDDIR>>/src/topfd/deconv/deconv_process.hpp:25,
from /<<PKGBUILDDIR>>/src/topfd/deconv/deconv_process.cpp:37:
/usr/include/pwizlite/pwiz/utility/misc/Filesystem.hpp:75:24: error:
redefinition of âstd::string boost::filesystem::extension(const path&)â
75 | inline std::string extension(const path& p)
| ^~~~~~~~~
In file included from /usr/include/boost/filesystem.hpp:21,
from /<<PKGBUILDDIR>>/src/topfd/deconv/deconv_process.cpp:17:
/usr/include/boost/filesystem/convenience.hpp:29:20: note: âstd::string
boost::filesystem::extension(const path&)â previously defined here
29 | inline std::string extension(const path& p)
| ^~~~~~~~~
/usr/include/pwizlite/pwiz/utility/misc/Filesystem.hpp:80:24: error:
redefinition of âstd::string boost::filesystem::basename(const path&)â
80 | inline std::string basename(const path& p)
| ^~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: âstd::string
boost::filesystem::basename(const path&)â previously defined here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/usr/include/pwizlite/pwiz/utility/misc/Filesystem.hpp:85:17: error:
redefinition of âboost::filesystem::path
boost::filesystem::change_extension(const path&, const path&)â
85 | inline path change_extension(const path& p, const path&
new_extension)
| ^~~~~~~~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:41:13: note:
âboost::filesystem::path boost::filesystem::change_extension(const path&,
const path&)â previously defined here
41 | inline path change_extension(const path& p, const path& new_extension)
| ^~~~~~~~~~~~~~~~
[ 1%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/dp/dp_a.cpp.o
/usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<P
[too-long-redacted] UILDDIR>>/src/topfd/dp/dp_a.cpp
make[3]: *** [CMakeFiles/topfd_gui.dir/build.make:195:
CMakeFiles/topfd_gui.dir/src/topfd/deconv/deconv_process.cpp.o] Error 1
make[3]: *** Waiting for unfinished jobs....
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make[2]: *** [CMakeFiles/Makefile2:186: CMakeFiles/topfd_gui.dir/all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make[1]: *** [Makefile:139: all] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
dh_auto_build: error: cd obj-x86_64-linux-gnu && make -j2 "INSTALL=install
--strip-program=true" VERBOSE=1 returned exit code 2
make: *** [debian/rules:10: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
--- End Message ---
--- Begin Message ---
Package: src:toppic
Version: 1.5.3+dfsg1-1
Severity: serious
Tags: ftbfs forky sid
Greetings,
a new upstream version along with a new Debian package seem to have
resolved the issue.
Feel free to reopen if this is not true.
Sincerely
Filippo Rusconi <[email protected]>
--
⢀⣴⠾⠻⢶⣦⠀ Filippo Rusconi, PhD
⣾⠁⢠⠒⠀⣿⡁ Researcher at CNRS
⢿⡄⠘⠷⠚⠋⠀ Debian Developer
⠈⠳⣄⠀⠀⠀⠀ http://msxpertsuite.org
http://www.debian.org
--- End Message ---