Your message dated Wed, 22 Oct 2025 18:18:51 +0000
with message-id <[email protected]>
and subject line Bug#1075270: fixed in mia 2.4.7-14
has caused the Debian Bug report #1075270,
regarding mia: ftbfs with GCC-14
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1075270: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1075270
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:mia
Version: 2.4.7-13
Severity: important
Tags: sid trixie
User: [email protected]
Usertags: ftbfs-gcc-14
[This bug is targeted to the upcoming trixie release]
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-14/g++-14, but succeeds to build with gcc-13/g++-13. The
severity of this report will be raised before the trixie release.
The full build log can be found at:
http://qa-logs.debian.net/2024/07/01/mia_2.4.7-13_unstable_gccexp.log
The last lines of the build log are at the end of this report.
To build with GCC 14, either set CC=gcc-14 CXX=g++-14 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-14/porting_to.html
[...]
215 | class EXPORT_2D range2d_iterator: public
std::iterator<std::forward_iterator_tag, typename I::value_type>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14/string:47,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/ostream:40,
from /usr/include/c++/14/iostream:41,
from /<<PKGBUILDDIR>>/mia/core/factory.hh:24,
from /<<PKGBUILDDIR>>/mia/3d/vfregularizer.hh:25:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/mia/2d/datafield.hh:31,
from /<<PKGBUILDDIR>>/mia/3d/datafield.hh:32,
from /<<PKGBUILDDIR>>/mia/3d/vectorfield.hh:25,
from /<<PKGBUILDDIR>>/mia/3d/vfregularizerkernel.hh:26,
from /<<PKGBUILDDIR>>/mia/3d/vfregularizerkernel.cc:22:
/<<PKGBUILDDIR>>/mia/2d/iterator.hh:215:48: warning: ‘template<class _Category,
class _Tp, class _Distance, class _Pointer, class _Reference> struct
std::iterator’ is deprecated [-Wdeprecated-declarations]
215 | class EXPORT_2D range2d_iterator: public
std::iterator<std::forward_iterator_tag, typename I::value_type>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14/string:47,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/ostream:40,
from /usr/include/c++/14/iostream:41,
from /<<PKGBUILDDIR>>/mia/core/factory.hh:24,
from /<<PKGBUILDDIR>>/mia/3d/vfregularizerkernel.hh:25:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
[ 29%] Building CXX object mia/3d/CMakeFiles/mia3d.dir/vfio.cc.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/mia/3d && /usr/bin/c++
-DBOOST_ALL_DYN_LINK -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB
-DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB
-DBOOST_FILESYSTEM_VERSION=3 -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB
-DHAVE_CONFIG_H -Dmia3d_EXPORTS -I/usr/include/eigen3 -I/usr/include/libxml2
-I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<PKGBUILDDIR>> -g -O2
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -MD -MT
mia/3d/CMakeFiles/mia3d.dir/vfio.cc.o -MF CMakeFiles/mia3d.dir/vfio.cc.o.d -o
CMakeFiles/mia3d.dir/vfio.cc.o -c /<<PKGBUILDDIR>>/mia/3d/vfio.cc
In file included from /<<PKGBUILDDIR>>/mia/2d/datafield.hh:31,
from /<<PKGBUILDDIR>>/mia/3d/datafield.hh:32,
from /<<PKGBUILDDIR>>/mia/3d/vectorfield.hh:25,
from /<<PKGBUILDDIR>>/mia/3d/vfio.hh:28,
from /<<PKGBUILDDIR>>/mia/3d/vfio.cc:24:
/<<PKGBUILDDIR>>/mia/2d/iterator.hh:215:48: warning: ‘template<class _Category,
class _Tp, class _Distance, class _Pointer, class _Reference> struct
std::iterator’ is deprecated [-Wdeprecated-declarations]
215 | class EXPORT_2D range2d_iterator: public
std::iterator<std::forward_iterator_tag, typename I::value_type>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/bits/stl_tree.h:63,
from /usr/include/c++/14/set:62,
from /<<PKGBUILDDIR>>/mia/3d/vfio.hh:24:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
[ 29%] Linking CXX executable test-2dimage-filter-convert
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/mia/2d/filter && /usr/bin/cmake -E
cmake_link_script CMakeFiles/test-2dimage-filter-convert.dir/link.txt
--verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2
-fvisibility=hidden -Wl,-z,relro -Wl,-z,now -fvisibility=hidden -rdynamic
"CMakeFiles/test-2dimage-filter-convert.dir/test_convert.cc.o"
"CMakeFiles/2dimage-filter-convert-common.dir/convert.cc.o" -o
test-2dimage-filter-convert
-Wl,-rpath,/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/mia/2d:/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/mia/core
../libmia2dtest-2.4.so.6.0.1 ../libmia2d-2.4.so.6.0.1
../../core/libmiacore-2.4.so.6.0.1 -lgsl -lgslcblas -lm
/usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0
/usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0
/usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 -lpthread -Wl,-Bstatic -ldl
-Wl,-Bdynamic -lfftw3f -lxml2
/usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 29%] Built target test-2dimage-filter-convert
[ 29%] Linking CXX shared library libmia3d-2.4.so
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/mia/3d && /usr/bin/cmake -E
cmake_link_script CMakeFiles/mia3d.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2
-fvisibility=hidden -Wl,-z,relro -Wl,-z,now -fvisibility=hidden -shared
-Wl,-soname,libmia3d-2.4.so.6 -o libmia3d-2.4.so.6.0.1
CMakeFiles/mia3d.dir/affine_matrix.cc.o CMakeFiles/mia3d.dir/camera.cc.o
CMakeFiles/mia3d.dir/cost.cc.o CMakeFiles/mia3d.dir/creator.cc.o
CMakeFiles/mia3d.dir/critical_point.cc.o
CMakeFiles/mia3d.dir/2dimagefifofilter.cc.o CMakeFiles/mia3d.dir/datafield.cc.o
CMakeFiles/mia3d.dir/distance.cc.o CMakeFiles/mia3d.dir/filter.cc.o
CMakeFiles/mia3d.dir/fullcost.cc.o CMakeFiles/mia3d.dir/fuzzyseg.cc.o
CMakeFiles/mia3d.dir/fuzzyclustersolver_cg.cc.o CMakeFiles/mia3d.dir/ica.cc.o
CMakeFiles/mia3d.dir/image.cc.o CMakeFiles/mia3d.dir/imagedraw.cc.o
CMakeFiles/mia3d.dir/imageio.cc.o CMakeFiles/mia3d.dir/imagecollect.cc.o
CMakeFiles/mia3d.dir/interpolator.cc.o CMakeFiles/mia3d.dir
/landmark.cc.o CMakeFiles/mia3d.dir/landmarklist.cc.o
CMakeFiles/mia3d.dir/landmarklistio.cc.o CMakeFiles/mia3d.dir/maskedcost.cc.o
CMakeFiles/mia3d.dir/matrix.cc.o CMakeFiles/mia3d.dir/model.cc.o
CMakeFiles/mia3d.dir/multicost.cc.o CMakeFiles/mia3d.dir/nfg.cc.o
CMakeFiles/mia3d.dir/nonrigidregister.cc.o
CMakeFiles/mia3d.dir/orientation.cc.o CMakeFiles/mia3d.dir/ppmatrix.cc.o
CMakeFiles/mia3d.dir/quaternion.cc.o CMakeFiles/mia3d.dir/register.cc.o
CMakeFiles/mia3d.dir/rigidregister.cc.o CMakeFiles/mia3d.dir/rot.cc.o
CMakeFiles/mia3d.dir/shape.cc.o CMakeFiles/mia3d.dir/similarity_profile.cc.o
CMakeFiles/mia3d.dir/splinetransformpenalty.cc.o
CMakeFiles/mia3d.dir/stackdisttrans.cc.o CMakeFiles/mia3d.dir/timestep.cc.o
CMakeFiles/mia3d.dir/trackpoint.cc.o CMakeFiles/mia3d.dir/transform.cc.o
CMakeFiles/mia3d.dir/transformfactory.cc.o
CMakeFiles/mia3d.dir/transformio.cc.o CMakeFiles/mia3d.dir/vectorfield.cc.o
CMakeFiles/mia3d.dir/vfregularizer.cc.o
CMakeFiles/mia3d.dir/vfregularizerkernel.c
c.o CMakeFiles/mia3d.dir/vfio.cc.o
-Wl,-rpath,/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/mia/2d:/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/mia/core:
../2d/libmia2d-2.4.so.6.0.1 ../core/libmiacore-2.4.so.6.0.1 -lgsl -lgslcblas
-lm /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0
/usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0
/usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 -lpthread -Wl,-Bstatic -ldl
-Wl,-Bdynamic -lfftw3f -lxml2
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/mia/3d && /usr/bin/cmake -E
cmake_symlink_library libmia3d-2.4.so.6.0.1 libmia3d-2.4.so.6 libmia3d-2.4.so
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 29%] Built target mia3d
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make[2]: *** [Makefile:149: all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
dh_auto_build: error: cd obj-x86_64-linux-gnu && make -j8 "INSTALL=install
--strip-program=true" VERBOSE=1 returned exit code 2
make[1]: *** [debian/rules:52: override_dh_auto_build-arch] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:32: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--- End Message ---
--- Begin Message ---
Source: mia
Source-Version: 2.4.7-14
Done: Yavor Doganov <[email protected]>
We believe that the bug you reported is fixed in the latest version of
mia, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Yavor Doganov <[email protected]> (supplier of updated mia package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 22 Oct 2025 11:46:43 +0300
Source: mia
Architecture: source
Version: 2.4.7-14
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Yavor Doganov <[email protected]>
Closes: 1075270 1113285
Changes:
mia (2.4.7-14) unstable; urgency=medium
.
[ ikeadeoyin ]
* Team upload.
* Add autopkgtest
.
[ Yavor Doganov ]
* debian/patches/gcc-14.patch: New; fix FTBFS with GCC 14 and 15
(Closes: #1075270).
* debian/patches/groff-warnings.patch: New.
* debian/patches/spelling-errors.patch: Likewise.
* debian/patches/vtk9.patch: Fix DEP-3 headers.
* debian/patches/fix-g++11.diff: Likewise.
* debian/patches/fix-gcc-13.patch: Likewise.
* debian/rules: Remove workarounds for mips and mipsel.
(override_dh_auto_configure): Pass -DCMAKE_POLICY_VERSION_MINIMUM=3.5
to fix FTBFS with CMake 4 (Closes: #1113285).
(override_dh_auto_test-arch): New; always skip a flaky test and two
additional tests on 32-bit architectures.
(override_dh_auto_test-indep): New dummy target.
* debian/control (Build-Depends): Require libvtk9-dev (>= 9.5) for the
ongoing vtk9 library transition.
(Rules-Requires-Root): Remove; it's the default.
(Standards-Version): Claim compliance with 4.7.2; no changes needed.
(libmia-2.4-4): Mark as Multi-Arch: same.
* debian/tests/testsuite: New test; run the whole testsuite. This is
likely to timeout on some architectures.
* debian/tests/control (Tests): Set to testsuite.
(Depends): Set to @builddeps@ only.
(Restrictions): Add build-needed.
* debian/tests/run-unit-test: Delete; these tests are part of the
testsuite and cannot be run in isolation without a built tree.
* debian/README.test: Delete.
* debian/docs: Likewise.
* debian/libmia-2.4-doc.install: Remove config.h.
* debian/libmia-2.4-doc.examples: Replace test/testdata with
examples/2d/filter/*. The latter is equally useless as examples but
at least silence a Lintian complaint in pedantic mode.
* debian/libmia-2.4-doc.lintian-overrides: Delete; unused.
* debian/libmia-2.4-4.lintian-overrides: Fix typo in the comment.
* debian/mia-tools.lintian-overrides: Remove
python-package-missing-depends-on-python; unused.
* debian/watch: Upgrade to version 5.
* debian/copyright: Update copyright years for Debian packaging.
.
[ Andreas Tille ]
* d/copyright: Secure URI in Source field
* Use default Salsa CI
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