Your message dated Mon, 20 Oct 2025 15:19:11 +0000
with message-id <[email protected]>
and subject line Bug#1118336: fixed in ncbi-entrez-direct 24.0.20250523+dfsg-2
has caused the Debian Bug report #1118336,
regarding ncbi-entrez-direct: Fragile manual dependency setup causes FTBFS
to be marked as done.
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If this is not the case it is now your responsibility to reopen the
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1118336: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1118336
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--- Begin Message ---
Source: ncbi-entrez-direct
Version: 24.0.20250523+dfsg-1
Severity: serious
Justification: FTBFS
Tags: sid ftbfs patch
I am updating golang-github-go-playground-validator-v10, which
includes a new dependency. This change has revealed what appears to be
a fragile manual dependency setup of the golang sources in ncbi-entrez-
direct's d/rules.
The fix is easy enough (see end of message), but I think it would be
better to rely on dh-golang's abilities to properly setup the build
environment for the golang part of this package.
The error is:
> [snip]
> mkdir -p
> /build/reproducible-path/ncbi-entrez-direct-24.0.20250523+dfsg/obj-x86_64-linux-gnu/src/gopkg.in/
> ln -s /usr/share/gocode/src/gopkg.in/yaml.v2
> /build/reproducible-path/ncbi-entrez-direct-24.0.20250523+dfsg/obj-x86_64-linux-gnu/src/gopkg.in/yaml.v2
> mkdir -p
> /build/reproducible-path/ncbi-entrez-direct-24.0.20250523+dfsg/obj-x86_64-linux-gnu/src/github.com/klauspost
> ln -s /usr/share/gocode/src/github.com/klauspost/cpuid/v2 \
>
> /build/reproducible-path/ncbi-entrez-direct-24.0.20250523+dfsg/obj-x86_64-linux-gnu/src/github.com/klauspost/cpuid
> go build -v -gccgoflags '-g -O2 -Werror=implicit-function-declaration
> -ffile-prefix-map=/build/reproducible-path/ncbi-entrez-direct-24.0.20250523+dfsg=.
> -fstack-protector-strong -fstack-clash-protection -Wformat
> -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now' -o bin/edict
> \
>
> /build/reproducible-path/ncbi-entrez-direct-24.0.20250523+dfsg/obj-x86_64-linux-gnu/src/main/edict.go
> obj-x86_64-linux-gnu/src/github.com/go-playground/validator/v10/baked_in.go:28:2:
> cannot find package "github.com/gabriel-vasile/mimetype" in any of:
> /usr/lib/go-1.24/src/github.com/gabriel-vasile/mimetype (from $GOROOT)
>
> /build/reproducible-path/ncbi-entrez-direct-24.0.20250523+dfsg/obj-x86_64-linux-gnu/src/github.com/gabriel-vasile/mimetype
> (from $GOPATH)
> make[1]: *** [debian/rules:141: bin/edict] Error 1
And the patch:
> diff --git a/debian/rules b/debian/rules
> index 67a5524..d158a58 100755
> --- a/debian/rules
> +++ b/debian/rules
> @@ -56,6 +56,7 @@ GOLIBSRC_ = $(GH)/fatih/color $(GH)/gedex/inflector \
> $(GH)/go-playground/locales \
> $(GH)/go-playground/universal-translator \
> $(GH)/go-playground/validator/v10 $(GH)/goccy/go-yaml \
> + $(GH)/gabriel-vasile/mimetype \
> $(GH)/klauspost/compress $(GH)/klauspost/cpuid \
> $(GH)/klauspost/pgzip $(GH)/komkom/toml $(GH)/leodido/go-urn \
> $(GH)/mattn/go-colorable $(GH)/mattn/go-isatty \
signature.asc
Description: This is a digitally signed message part
--- End Message ---
--- Begin Message ---
Source: ncbi-entrez-direct
Source-Version: 24.0.20250523+dfsg-2
Done: Aaron M. Ucko <[email protected]>
We believe that the bug you reported is fixed in the latest version of
ncbi-entrez-direct, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Aaron M. Ucko <[email protected]> (supplier of updated ncbi-entrez-direct package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 20 Oct 2025 10:42:25 -0400
Source: ncbi-entrez-direct
Architecture: source
Version: 24.0.20250523+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Aaron M. Ucko <[email protected]>
Closes: 1118336
Changes:
ncbi-entrez-direct (24.0.20250523+dfsg-2) unstable; urgency=medium
.
* debian/control: Reformat via "cme fix dpkg-control" (routine-update).
* debian/rules:
- Add a symlink for github.com/gabriel-vasile/mimetype, now needed by
github.com/go-playground/validator/v10 (which is itself a dependency
of github.com/gin-gonic/gin). (Closes: #1118336.)
- Relax /usr/share/gocode content assumptions; current indirect
dependencies may be legitimately absent for (potential) backports.
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