Your message dated Wed, 24 Sep 2025 07:49:44 +0000
with message-id <[email protected]>
and subject line Bug#1096607: fixed in fasta3 36.3.8i.14-Nov-2020-4
has caused the Debian Bug report #1096607,
regarding fasta3: ftbfs with GCC-15
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1096607: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1096607
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:fasta3
Version: 36.3.8i.14-Nov-2020-3
Severity: important
Tags: sid forky
User: [email protected]
Usertags: ftbfs-gcc-15
[This bug is NOT targeted to the upcoming trixie release]
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-15/g++-15, but succeeds to build with gcc-14/g++-14. The
severity of this report will be raised before the forky release.
The full build log can be found at:
http://qa-logs.debian.net/2025/02/16/amd64exp/fasta3_36.3.8i.14-Nov-2020-3_unstable_gccexp.log.gz
The last lines of the build log are at the end of this report.
To build with GCC 15, either set CC=gcc-15 CXX=g++-15 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
GCC 15 now defaults to the C23/C++23 standards, exposing many FTBFS.
Other Common build failures are new warnings resulting in build failures
with -Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-15/porting_to.html
[...]
| ^~~~~~~~
mmgetaa.c:619:1: error: conflicting types for ‘aranlibm’; have ‘void(char *,
int, fseek_t, char *, struct lmf_str *)’ {aka ‘void(char *, int, long int,
char *, struct lmf_str *)’}
619 | aranlibm(char *str,
| ^~~~~~~~
mmgetaa.c:84:22: note: previous declaration of ‘aranlibm’ with type ‘void(void)’
84 | int agetlibm(); void aranlibm();
| ^~~~~~~~
mmgetaa.c:727:1: error: conflicting types for ‘vranlibm’; have ‘void(char *,
int, fseek_t, char *, struct lmf_str *)’ {aka ‘void(char *, int, long int,
char *, struct lmf_str *)’}
727 | vranlibm(char *str,
| ^~~~~~~~
mmgetaa.c:86:6: note: previous declaration of ‘vranlibm’ with type ‘void(void)’
86 | void vranlibm();
| ^~~~~~~~
mmgetaa.c:776:1: error: conflicting types for ‘gcg_getlibm’; have ‘int(unsigned
char *, int, char *, int, fseek_t *, int *, struct lmf_str *, long int *)’
{aka ‘int(unsigned char *, int, char *, int, long int *, int *, struct
lmf_str *, long int *)’}
776 | gcg_getlibm(unsigned char *seq,
| ^~~~~~~~~~~
mmgetaa.c:87:5: note: previous declaration of ‘gcg_getlibm’ with type
‘int(void)’
87 | int gcg_getlibm();
| ^~~~~~~~~~~
mmgetaa.c:914:1: error: conflicting types for ‘lgetlibm’; have ‘int(unsigned
char *, int, char *, int, fseek_t *, int *, struct lmf_str *, long int *)’
{aka ‘int(unsigned char *, int, char *, int, long int *, int *, struct
lmf_str *, long int *)’}
914 | lgetlibm(unsigned char *seq,
| ^~~~~~~~
mmgetaa.c:85:5: note: previous declaration of ‘lgetlibm’ with type ‘int(void)’
85 | int lgetlibm(); void lranlibm();
| ^~~~~~~~
mmgetaa.c:1050:1: error: conflicting types for ‘lranlibm’; have ‘void(char *,
int, fseek_t, char *, struct lmf_str *)’ {aka ‘void(char *, int, long int,
char *, struct lmf_str *)’}
1050 | lranlibm(char *str,
| ^~~~~~~~
mmgetaa.c:85:22: note: previous declaration of ‘lranlibm’ with type ‘void(void)’
85 | int lgetlibm(); void lranlibm();
| ^~~~~~~~
mmgetaa.c: In function ‘check_mmap’:
mmgetaa.c:1077:31: warning: format ‘%lld’ expects argument of type ‘long long
int’, but argument 4 has type ‘MM_OFF’ {aka ‘long int’} [-Wformat=]
1077 | fprintf(stderr,"%d:\t%lld\t%lld\t%lld\n",
| ~~~^
| |
| long long int
| %ld
1078 | i,m_fd->d_pos_arr[i],m_fd->s_pos_arr[i],
| ~~~~~~~~~~~~~~~~~~
| |
| MM_OFF {aka long int}
mmgetaa.c:1077:37: warning: format ‘%lld’ expects argument of type ‘long long
int’, but argument 5 has type ‘MM_OFF’ {aka ‘long int’} [-Wformat=]
1077 | fprintf(stderr,"%d:\t%lld\t%lld\t%lld\n",
| ~~~^
| |
| long long int
| %ld
1078 | i,m_fd->d_pos_arr[i],m_fd->s_pos_arr[i],
| ~~~~~~~~~~~~~~~~~~
| |
| MM_OFF {aka long int}
mmgetaa.c:1077:43: warning: format ‘%lld’ expects argument of type ‘long long
int’, but argument 6 has type ‘MM_OFF’ {aka ‘long int’} [-Wformat=]
1077 | fprintf(stderr,"%d:\t%lld\t%lld\t%lld\n",
| ~~~^
| |
| long long int
| %ld
1078 | i,m_fd->d_pos_arr[i],m_fd->s_pos_arr[i],
1079 | m_fd->d_pos_arr[i+1]-m_fd->s_pos_arr[i]);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| MM_OFF {aka long int}
make[2]: *** [../make/Makefile.fcom:300: lgetaa_m.o] Error 1
make[2]: Leaving directory
'/build/reproducible-path/fasta3-36.3.8i.14-Nov-2020/src'
dh_auto_build: error: cd src && make -j8 "INSTALL=install --strip-program=true"
-f ../make/Makefile.linux64 returned exit code 2
make[1]: *** [debian/rules:26: override_dh_auto_build] Error 25
make[1]: Leaving directory '/build/reproducible-path/fasta3-36.3.8i.14-Nov-2020'
make: *** [debian/rules:20: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--- End Message ---
--- Begin Message ---
Source: fasta3
Source-Version: 36.3.8i.14-Nov-2020-4
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
fasta3, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated fasta3 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 24 Sep 2025 08:34:41 +0200
Source: fasta3
Architecture: source
Version: 36.3.8i.14-Nov-2020-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 1096607
Changes:
fasta3 (36.3.8i.14-Nov-2020-4) unstable; urgency=medium
.
* Team upload.
* Fix build with gcc-15
Closes: #1096607
* Standards-Version: 4.7.2 (routine-update)
* d/copyright: Mention files in src/simde
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