Your message dated Mon, 13 Oct 2025 01:20:15 +0000
with message-id <[email protected]>
and subject line Bug#1114379: fixed in silx 2.2.1+dfsg-5
has caused the Debian Bug report #1114379,
regarding silx: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i
python{version} -p 3.13 returned exit code 13
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1114379: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1114379
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:silx
Version: 2.2.1+dfsg-3
Severity: serious
Tags: ftbfs forky sid
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build.
Below you will find how the build ends (probably the most relevant part,
but not necessarily). If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202509/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:silx, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
pybuild --clean -i python{version} -p 3.13
rm -rf .pybuild/
find . -name \*.pyc -exec rm {} \;
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/silx.substvars debian/python3-silx.substvars
debian/python-silx-doc.substvars debian/files
rm -fr -- debian/silx/ debian/tmp/ debian/python3-silx/
debian/python-silx-doc/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path
.\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o
-type f -a \
[... snipped ...]
# temporary install the scipy dataset before running the test
pybuild --test -s custom --test-args="mkdir -p {home_dir}/.cache/scipy-data/ &&
cp debian/dataset-ascent/ascent.dat {home_dir}/.cache/scipy-data/"
I: pybuild base:311: mkdir -p
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_silx/.cache/scipy-data/ && cp
debian/dataset-ascent/ascent.dat
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_silx/.cache/scipy-data/
GPU=False WITH_QT_TEST=False SILX_OPENCL=False SILX_TEST_LOW_MEM=False \
dh_auto_test
pybuild --test --test-pytest -i python{version} -p 3.13
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_silx/build;
python3.13 -m pytest
============================= test session starts ==============================
platform linux -- Python 3.13.7, pytest-8.4.1, pluggy-1.6.0
rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_silx/build
configfile: pyproject.toml
plugins: xvfb-3.0.0, mock-3.14.1, typeguard-4.4.4
collected 2523 items
silx/app/compare/test/test_compare.py ss [ 0%]
silx/app/compare/test/test_launcher.py sssss [ 0%]
silx/app/test/test_convert.py .... [ 0%]
silx/app/utils/test/test_parseutils.py ..... [ 0%]
silx/app/view/test/test_launcher.py sssss [ 0%]
silx/app/view/test/test_plotselection.py sssss [ 1%]
silx/app/view/test/test_view.py ssssssssssssssssssssssssssssssssss [ 2%]
silx/gui/_glutils/test/test_gl.py ss [ 2%]
silx/gui/data/test/test_arraywidget.py ssssssssssssssss [ 3%]
silx/gui/data/test/test_dataviewer.py ssssssssssssssssssssssssssssssssss [ 4%]
ssssssss [ 4%]
silx/gui/data/test/test_numpyaxesselector.py sssssssss [ 5%]
silx/gui/data/test/test_textformatter.py ssssssssssssssssssssssss [ 6%]
silx/gui/dialog/test/test_colormapdialog.py ssssssssssssssssssssssssssss [ 7%]
s [ 7%]
silx/gui/dialog/test/test_datafiledialog.py ssssssssssssssssssssssssssss [ 8%]
sssssss [ 8%]
silx/gui/dialog/test/test_imagefiledialog.py sssssssssssssssssssssssssss [ 9%]
sssssss [ 9%]
silx/gui/fit/test/test_backgroundwidget.py ssss [ 10%]
silx/gui/fit/test/test_fitconfig.py ssss [ 10%]
silx/gui/fit/test/test_fitwidget.py sss [ 10%]
silx/gui/hdf5/test/test_hdf5.py ssssssssssssssssssssssssssssssssssssssss [ 11%]
sssssssssssssssssssssssssssssssssssss [ 13%]
silx/gui/plot/_utils/test/test_dtime_ticklayout.py sssss [ 13%]
silx/gui/plot/_utils/test/test_ticklayout.py sss [ 13%]
silx/gui/plot/test/test_alphaslider.py sssssssss [ 14%]
silx/gui/plot/test/test_axis.py ssss [ 14%]
silx/gui/plot/test/test_colorbar.py ssssssssss [ 14%]
silx/gui/plot/test/test_compareimages.py sssssssssssssssssssssssssssssss [ 15%]
sssssssssssssssss [ 16%]
silx/gui/plot/test/test_compleximageview.py s [ 16%]
silx/gui/plot/test/test_curvesroiwidget.py ssssssssssssss [ 17%]
silx/gui/plot/test/test_imagestack.py ssss [ 17%]
silx/gui/plot/test/test_imageview.py ssssssss [ 17%]
silx/gui/plot/test/test_interaction.py s [ 17%]
silx/gui/plot/test/test_item.py sssssssssssssssssssssssssssssssssssss [ 19%]
silx/gui/plot/test/test_legendselector.py ss [ 19%]
silx/gui/plot/test/test_limitconstraints.py sssssssss [ 19%]
silx/gui/plot/test/test_masktoolswidget.py sssss [ 19%]
silx/gui/plot/test/test_pixelintensityhistoaction.py ssss [ 19%]
silx/gui/plot/test/test_plotactions.py ss [ 20%]
silx/gui/plot/test/test_plotinteraction.py sssssssssssssssssssss [ 20%]
silx/gui/plot/test/test_plotwidget.py ssssssssssssssssssssssssssssssssss [ 22%]
ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 25%]
ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 27%]
sssssssss [ 28%]
silx/gui/plot/test/test_plotwidgetactiveitem.py sssssssssssssssss [ 28%]
silx/gui/plot/test/test_plotwidgetdatamargins.py sssssssss [ 29%]
silx/gui/plot/test/test_plotwidgetnobackend.py sssssssssssssssssssssss [ 30%]
silx/gui/plot/test/test_plotwindow.py ssssss [ 30%]
silx/gui/plot/test/test_roistatswidget.py ssssssssssss [ 30%]
silx/gui/plot/test/test_saveaction.py ss [ 30%]
silx/gui/plot/test/test_scattermasktoolswidget.py sssss [ 31%]
silx/gui/plot/test/test_scatterview.py ss [ 31%]
silx/gui/plot/test/test_stackview.py ssssssssss [ 31%]
silx/gui/plot/test/test_stats.py sssssssssssssssssssssssssssssssss [ 32%]
silx/gui/plot/test/test_utilsaxis.py sssssssssssssss [ 33%]
silx/gui/plot/tools/test/test_curvelegendswidget.py ss [ 33%]
silx/gui/plot/tools/test/test_profile.py sssssssssss [ 34%]
silx/gui/plot/tools/test/test_roicore.py ssssssssssss [ 34%]
silx/gui/plot/tools/test/test_roiitems.py sssssssssssssssssssssssssss [ 35%]
silx/gui/plot/tools/test/test_scatterprofiletoolbar.py sss [ 35%]
silx/gui/plot/tools/test/test_tools.py sssss [ 35%]
silx/gui/plot3d/scene/test/test_transform.py s [ 35%]
silx/gui/plot3d/scene/test/test_utils.py ssssssss [ 36%]
silx/gui/plot3d/test/test_gl.py s [ 36%]
silx/gui/plot3d/test/test_scalarfieldview.py sss [ 36%]
silx/gui/plot3d/test/test_scenewidget.py s [ 36%]
silx/gui/plot3d/test/test_scenewidgetpicking.py ssssss [ 36%]
silx/gui/plot3d/test/test_scenewindow.py sssss [ 36%]
silx/gui/plot3d/test/test_statswidget.py ss [ 37%]
silx/gui/plot3d/tools/test/test_positioninfowidget.py s [ 37%]
silx/gui/test/test_colors.py sssssssssssssssssssssssssssssssssssssssssss [ 38%]
ssssss [ 39%]
silx/gui/test/test_console.py ss [ 39%]
silx/gui/test/test_icons.py ssssssssssssssss [ 39%]
silx/gui/test/test_qt.py ssss [ 39%]
silx/gui/utils/test/test_async.py sss [ 39%]
silx/gui/utils/test/test_blocksignals.py ss [ 40%]
silx/gui/utils/test/test_glutils.py ssss [ 40%]
silx/gui/utils/test/test_image.py ssssss [ 40%]
silx/gui/utils/test/test_qtutils.py sssss [ 40%]
silx/gui/utils/test/test_testutils.py s [ 40%]
silx/gui/widgets/test/test_boxlayoutdockwidget.py s [ 40%]
silx/gui/widgets/test/test_elidedlabel.py ssssssss [ 41%]
silx/gui/widgets/test/test_floatedit.py ssss [ 41%]
silx/gui/widgets/test/test_flowlayout.py s [ 41%]
silx/gui/widgets/test/test_framebrowser.py s [ 41%]
silx/gui/widgets/test/test_hierarchicaltableview.py sss [ 41%]
silx/gui/widgets/test/test_legendiconwidget.py sss [ 41%]
silx/gui/widgets/test/test_periodictable.py ssssssss [ 41%]
silx/gui/widgets/test/test_printpreview.py ssss [ 42%]
silx/gui/widgets/test/test_rangeslider.py sss [ 42%]
silx/gui/widgets/test/test_stackedprogressbar.py ssss [ 42%]
silx/gui/widgets/test/test_tablewidget.py s [ 42%]
silx/gui/widgets/test/test_threadpoolpushbutton.py sssss [ 42%]
silx/gui/widgets/test/test_urlselectiontable.py ssss [ 42%]
silx/gui/widgets/test/test_waitingoverlay.py ss [ 42%]
silx/image/marchingsquares/test/test_funcapi.py .. [ 42%]
silx/image/marchingsquares/test/test_mergeimpl.py ...................... [ 43%]
.... [ 43%]
silx/image/test/test_bb.py .... [ 44%]
silx/image/test/test_bilinear.py ...... [ 44%]
silx/image/test/test_medianfilter.py .s [ 44%]
silx/image/test/test_shapes.py ............ [ 44%]
silx/image/test/test_tomography.py ss [ 44%]
silx/io/test/test_commonh5.py ............................... [ 46%]
silx/io/test/test_dictdump.py .........................F........ [ 47%]
silx/io/test/test_fabioh5.py ................................... [ 48%]
silx/io/test/test_fioh5.py ................. [ 49%]
silx/io/test/test_h5link_utils.py . [ 49%]
silx/io/test/test_h5py_utils.py ....... [ 49%]
silx/io/test/test_nxdata.py .................... [ 50%]
silx/io/test/test_octaveh5.py .. [ 50%]
silx/io/test/test_rawh5.py ... [ 50%]
silx/io/test/test_sliceh5.py ............ [ 51%]
silx/io/test/test_specfile.py ....................s. [ 52%]
silx/io/test/test_specfilewrapper.py .......... [ 52%]
silx/io/test/test_spech5.py ............................................ [ 54%]
.. [ 54%]
silx/io/test/test_spectoh5.py ...... [ 54%]
silx/io/test/test_url.py ............................................... [ 56%]
.. [ 56%]
silx/io/test/test_utils.py ............................................. [ 58%]
....................... [ 59%]
silx/io/test/test_write_to_h5.py ... [ 59%]
silx/math/fft/test/test_fft.py ssss.ss.s [ 59%]
silx/math/fit/test/test_bgtheories.py ...... [ 60%]
silx/math/fit/test/test_filters.py ... [ 60%]
silx/math/fit/test/test_fit.py ......... [ 60%]
silx/math/fit/test/test_fitmanager.py ............. [ 60%]
silx/math/fit/test/test_functions.py .......... [ 61%]
silx/math/fit/test/test_peaks.py .......................... [ 62%]
silx/math/medianfilter/test/test_medianfilter.py ....................... [ 63%]
............ [ 63%]
silx/math/test/test_HistogramndLut_nominal.py .......................... [ 64%]
......................... [ 65%]
silx/math/test/test_calibration.py ................. [ 66%]
silx/math/test/test_colormap.py ........... [ 66%]
silx/math/test/test_combo.py ..... [ 67%]
silx/math/test/test_histogramnd_error.py ......................... [ 68%]
silx/math/test/test_histogramnd_nominal.py ............................. [ 69%]
.............................................. [ 71%]
silx/math/test/test_histogramnd_vs_np.py ....s.........s.........s...... [ 72%]
...s.........s.........s.........s.........s.........s.........s........ [ 75%]
.s.........s.........s.........s.........s.........s.........s.........s [ 78%]
.........s.........s.........s.........s.........s.........s.........s.. [ 80%]
.......s.........s..... [ 81%]
silx/math/test/test_interpolate.py .... [ 81%]
silx/math/test/test_marchingcubes.py .. [ 82%]
silx/opencl/codec/test/test_bitshuffle_lz4.py ssssssssssssssssssssssss [ 82%]
silx/opencl/codec/test/test_byte_offset.py sssssss [ 83%]
silx/opencl/test/test_addition.py sss [ 83%]
silx/opencl/test/test_array_utils.py s [ 83%]
silx/opencl/test/test_backprojection.py sss [ 83%]
silx/opencl/test/test_convolution.py sssssssssssssssssssssssssssssssssss [ 84%]
ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 87%]
ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 90%]
sssssssssssss [ 91%]
silx/opencl/test/test_doubleword.py sssssssss [ 91%]
silx/opencl/test/test_image.py sss [ 91%]
silx/opencl/test/test_kahan.py ss [ 91%]
silx/opencl/test/test_linalg.py sss [ 91%]
silx/opencl/test/test_medfilt.py s [ 91%]
silx/opencl/test/test_projection.py s [ 91%]
silx/opencl/test/test_sparse.py ss [ 91%]
silx/opencl/test/test_stats.py s [ 92%]
silx/test/test_resources.py ................................ [ 93%]
silx/test/test_sx.py ssssssss [ 93%]
silx/test/test_version.py . [ 93%]
silx/utils/test/test_array_like.py ..................... [ 94%]
silx/utils/test/test_debug.py .... [ 94%]
silx/utils/test/test_deprecation.py ....... [ 94%]
silx/utils/test/test_enum.py . [ 94%]
silx/utils/test/test_external_resources.py ss [ 95%]
silx/utils/test/test_launcher.py ............... [ 95%]
silx/utils/test/test_number.py .......................... [ 96%]
silx/utils/test/test_proxy.py ............................... [ 97%]
silx/utils/test/test_retry.py ...... [ 98%]
silx/utils/test/test_testutils.py ....... [ 98%]
silx/utils/test/test_weakref.py ........................................ [100%]
=================================== FAILURES ===================================
______________________________ test_dicttonx_pint ______________________________
tmp_h5py_file = <HDF5 file "<_io.BytesIO object at 0x7faa94714b30>" (mode r+)>
@pytest.mark.skipif(pint is None, reason="Require pint")
def test_dicttonx_pint(tmp_h5py_file):
ureg = pint.UnitRegistry()
treedict = {
"array_mm": pint.Quantity([1, 2, 3], ureg.mm),
"value_kg": 3 * ureg.kg,
}
> dictdump.dicttonx(treedict, tmp_h5py_file)
silx/io/test/test_dictdump.py:836:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
silx/io/dictdump.py:737: in dicttonx
nxtreedict = nexus_to_h5_dict(treedict, parents=parents,
add_nx_class=add_nx_class)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
silx/io/dictdump.py:480: in nexus_to_h5_dict
copy[(key, "units")] = f"{value.units:~C}"
^^^^^^^^^^^^^^^^
/usr/lib/python3/dist-packages/pint/facets/plain/unit.py:67: in __format__
return self._REGISTRY.formatter.format_unit(self, spec)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/usr/lib/python3/dist-packages/pint/delegates/formatter/full.py:138: in
format_unit
return self.get_formatter(uspec).format_unit(
/usr/lib/python3/dist-packages/pint/delegates/formatter/plain.py:209: in
format_unit
numerator, denominator = prepare_compount_unit(
/usr/lib/python3/dist-packages/pint/delegates/formatter/_compound_unit_helpers.py:297:
in prepare_compount_unit
numerator = sort_func(numerator, registry)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/usr/lib/python3/dist-packages/pint/delegates/formatter/_compound_unit_helpers.py:189:
in sort_by_unit_name
return sorted(items, key=lambda el: el[2])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/usr/lib/python3/dist-packages/pint/delegates/formatter/_compound_unit_helpers.py:160:
in to_symbol_exponent_name
return registry._get_symbol(el[0]), el[1], el[0]
^^^^^^^^^^^^^^^^^^^^^^^^^^^
/usr/lib/python3/dist-packages/pint/facets/plain/registry.py:711: in _get_symbol
return self._units[name].symbol
^^^^^^^^^^^^^^^^^
/usr/lib/python3.13/collections/__init__.py:1019: in __getitem__
return self.__missing__(key) # support subclasses that define
__missing__
^^^^^^^^^^^^^^^^^^^^^
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = ChainMap({'meter': UnitDefinition(name='meter', defined_symbol='m',
aliases=('metre',), converter=ScaleConverter(scale...se', defined_symbol='cP',
aliases=(), converter=ScaleConverter(scale=0.01),
reference=<UnitsContainer({'poise': 1})>)})
key = 'millimeter'
def __missing__(self, key):
> raise KeyError(key)
E KeyError: 'millimeter'
/usr/lib/python3.13/collections/__init__.py:1011: KeyError
=============================== warnings summary ===============================
../../../../../../usr/lib/python3/dist-packages/jupyter_client/connect.py:22
/usr/lib/python3/dist-packages/jupyter_client/connect.py:22:
DeprecationWarning: Jupyter is migrating its paths to use standard platformdirs
given by the platformdirs library. To remove this warning and
see the appropriate new directories, set the environment variable
`JUPYTER_PLATFORM_DIRS=1` and then run `jupyter --paths`.
The use of platformdirs will be the default in `jupyter_core` v6
from jupyter_core.paths import jupyter_data_dir, jupyter_runtime_dir,
secure_write
../../../../../../usr/lib/python3/dist-packages/pytools/persistent_dict.py:52
/usr/lib/python3/dist-packages/pytools/persistent_dict.py:52:
RecommendedHashNotFoundWarning: Unable to import recommended hash
'siphash24.siphash13', falling back to 'hashlib.sha256'. Run 'python3 -m pip
install siphash24' to install the recommended hash.
warn("Unable to import recommended hash 'siphash24.siphash13', "
silx/io/test/test_h5py_utils.py: 10 warnings
/usr/lib/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning:
This process (pid=398) is multi-threaded, use of fork() may lead to deadlocks
in the child.
self.pid = os.fork()
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
=========================== short test summary info ============================
FAILED silx/io/test/test_dictdump.py::test_dicttonx_pint - KeyError: 'millime...
========== 1 failed, 1152 passed, 1370 skipped, 12 warnings in 21.81s ==========
E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_silx/build; python3.13 -m pytest
rm -fr -- /tmp/dh-xdg-rundir-3K5065Zw
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.13
returned exit code 13
make[1]: *** [debian/rules:68: override_dh_auto_test] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:28: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
--- End Message ---
--- Begin Message ---
Source: silx
Source-Version: 2.2.1+dfsg-5
Done: Colin Watson <[email protected]>
We believe that the bug you reported is fixed in the latest version of
silx, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Colin Watson <[email protected]> (supplier of updated silx package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 13 Oct 2025 02:04:11 +0100
Source: silx
Architecture: source
Version: 2.2.1+dfsg-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<[email protected]>
Changed-By: Colin Watson <[email protected]>
Closes: 1114379
Changes:
silx (2.2.1+dfsg-5) unstable; urgency=medium
.
* Team upload.
.
[ LONGEAC Clement ]
* d/t/control: Add ROCm autopkgtest.
.
[ Colin Watson ]
* TestDictToNx: use 'pint.get_application_registry()' instead of
'pint.UnitRegistry()' (closes: #1114379).
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silx_2.2.1+dfsg-5_source.buildinfo
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Git-Tag-Info: tag=b309fcfe10430bfc744c25e827e6b368360625b6
fp=ac0a4ff12611b6fccf01c111393587d97d86500b
Git-Tag-Tagger: Colin Watson <[email protected]>
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