Your message dated Thu, 09 Oct 2025 20:49:12 +0000
with message-id <[email protected]>
and subject line Bug#1097767: fixed in racon 1.5.0-4
has caused the Debian Bug report #1097767,
regarding racon: ftbfs with GCC-15
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1097767: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1097767
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:racon
Version: 1.5.0-3
Severity: important
Tags: sid forky
User: [email protected]
Usertags: ftbfs-gcc-15
[This bug is NOT targeted to the upcoming trixie release]
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-15/g++-15, but succeeds to build with gcc-14/g++-14. The
severity of this report will be raised before the forky release.
The full build log can be found at:
http://qa-logs.debian.net/2025/02/16/amd64exp/racon_1.5.0-3_unstable_gccexp.log.gz
The last lines of the build log are at the end of this report.
To build with GCC 15, either set CC=gcc-15 CXX=g++-15 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
GCC 15 now defaults to the C23/C++23 standards, exposing many FTBFS.
Other Common build failures are new warnings resulting in build failures
with -Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-15/porting_to.html
[...]
| ^~~~
/build/reproducible-path/racon-1.5.0/src/window.cpp:93:23: error: invalid types
‘int[uint32_t {aka unsigned int}]’ for array subscript
93 | if (positions_[i].first < offset && positions_[i].second >
| ^
/build/reproducible-path/racon-1.5.0/src/window.cpp:93:55: error: invalid types
‘int[uint32_t {aka unsigned int}]’ for array subscript
93 | if (positions_[i].first < offset && positions_[i].second >
| ^
/build/reproducible-path/racon-1.5.0/src/window.cpp:94:24: error: request for
member ‘front’ in ‘((racon::Window*)this)->racon::Window::sequences_’, which is
of non-class type ‘int’
94 | sequences_.front().second - offset) {
| ^~~~~
/build/reproducible-path/racon-1.5.0/src/window.cpp:96:27: error: invalid types
‘int[uint32_t {aka unsigned int}]’ for array subscript
96 | sequences_[i].first, sequences_[i].second,
| ^
/build/reproducible-path/racon-1.5.0/src/window.cpp:96:48: error: invalid types
‘int[uint32_t {aka unsigned int}]’ for array subscript
96 | sequences_[i].first, sequences_[i].second,
| ^
/build/reproducible-path/racon-1.5.0/src/window.cpp:101:27: error: invalid
types ‘int[uint32_t {aka unsigned int}]’ for array subscript
101 | positions_[i].first,
| ^
/build/reproducible-path/racon-1.5.0/src/window.cpp:102:27: error: invalid
types ‘int[uint32_t {aka unsigned int}]’ for array subscript
102 | positions_[i].second,
| ^
/build/reproducible-path/racon-1.5.0/src/window.cpp:105:27: error: invalid
types ‘int[uint32_t {aka unsigned int}]’ for array subscript
105 | sequences_[i].first, sequences_[i].second,
| ^
/build/reproducible-path/racon-1.5.0/src/window.cpp:105:48: error: invalid
types ‘int[uint32_t {aka unsigned int}]’ for array subscript
105 | sequences_[i].first, sequences_[i].second,
| ^
/build/reproducible-path/racon-1.5.0/src/window.cpp:110:23: error: invalid
types ‘int[uint32_t {aka unsigned int}]’ for array subscript
110 | if (qualities_[i].first == nullptr) {
| ^
/build/reproducible-path/racon-1.5.0/src/window.cpp:113:27: error: invalid
types ‘int[uint32_t {aka unsigned int}]’ for array subscript
113 | sequences_[i].first, sequences_[i].second);
| ^
/build/reproducible-path/racon-1.5.0/src/window.cpp:113:48: error: invalid
types ‘int[uint32_t {aka unsigned int}]’ for array subscript
113 | sequences_[i].first, sequences_[i].second);
| ^
/build/reproducible-path/racon-1.5.0/src/window.cpp:117:27: error: invalid
types ‘int[uint32_t {aka unsigned int}]’ for array subscript
117 | sequences_[i].first, sequences_[i].second,
| ^
/build/reproducible-path/racon-1.5.0/src/window.cpp:117:48: error: invalid
types ‘int[uint32_t {aka unsigned int}]’ for array subscript
117 | sequences_[i].first, sequences_[i].second,
| ^
/build/reproducible-path/racon-1.5.0/src/window.cpp:118:27: error: invalid
types ‘int[uint32_t {aka unsigned int}]’ for array subscript
118 | qualities_[i].first, qualities_[i].second);
| ^
/build/reproducible-path/racon-1.5.0/src/window.cpp:118:48: error: invalid
types ‘int[uint32_t {aka unsigned int}]’ for array subscript
118 | qualities_[i].first, qualities_[i].second);
| ^
/build/reproducible-path/racon-1.5.0/src/window.cpp:126:49: error: request for
member ‘size’ in ‘((racon::Window*)this)->racon::Window::sequences_’, which is
of non-class type ‘int’
126 | uint32_t average_coverage = (sequences_.size() - 1) / 2;
| ^~~~
/build/reproducible-path/racon-1.5.0/src/window.cpp:142:65: error: ‘id_’ was
not declared in this scope; did you mean ‘id_t’?
142 | "contig %lu might be chimeric in window %u!\n", id_,
rank_);
| ^~~
| id_t
/build/reproducible-path/racon-1.5.0/src/window.cpp:142:70: error: ‘rank_’ was
not declared in this scope; did you mean ‘rank’?
142 | "contig %lu might be chimeric in window %u!\n", id_,
rank_);
|
^~~~~
|
rank
make[3]: *** [CMakeFiles/racon.dir/build.make:138:
CMakeFiles/racon.dir/src/window.cpp.o] Error 1
make[3]: *** Waiting for unfinished jobs....
make[3]: Leaving directory
'/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu'
make[2]: *** [CMakeFiles/Makefile2:96: CMakeFiles/racon.dir/all] Error 2
make[2]: Leaving directory
'/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu'
make[1]: *** [Makefile:159: all] Error 2
make[1]: Leaving directory
'/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu'
dh_auto_build: error: cd obj-x86_64-linux-gnu && make -j8 "INSTALL=install
--strip-program=true" VERBOSE=1 returned exit code 2
make: *** [debian/rules:12: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--- End Message ---
--- Begin Message ---
Source: racon
Source-Version: 1.5.0-4
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
racon, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated racon package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Thu, 09 Oct 2025 21:53:44 +0200
Source: racon
Architecture: source
Version: 1.5.0-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 1097767
Changes:
racon (1.5.0-4) unstable; urgency=medium
.
[ Adrian Bunk ]
* Fix FTBFS with GCC 15. (Closes: #1097767)
.
[ Andreas Tille ]
* d/watch: version = 5
* Standards-Version: 4.7.2 (routine-update)
* debputy lint --auto-fix (routine-update)
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