--- Begin Message ---
Package: src:python-xarray
Version: 2025.08.0-3
Severity: serious
Tags: ftbfs forky sid
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build.
Below you will find how the build ends (probably the most relevant part,
but not necessarily). If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202509/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:python-xarray, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
pybuild --clean -i python{version} -p 3.13
rm -rf .pybuild/
find . -name \*.pyc -exec rm {} \;
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/python3-xarray.substvars
debian/python-xarray-doc.substvars debian/files
rm -fr -- debian/python3-xarray/ debian/tmp/ debian/python-xarray-doc/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path
.\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o
-type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
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=================================== FAILURES ===================================
__________________ test_mypy_pipe_function_unexpected_keyword __________________
[gw1] linux -- Python 3.13.7 /usr/bin/python3.13
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_dataarray_typing.yml:117:
E pytest_mypy_plugins.utils.TypecheckAssertionError: Invalid output:
E Actual:
E
../../<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/core/common:
note: "pipe" of "DataWithCoords" defined here (diff)
E main:7: error: Unexpected keyword argument "kw" for "pipe" of
"DataWithCoords" [call-arg] (diff)
E Expected:
E main:7: error: Unexpected keyword argument "kw" for "pipe" of
"DataWithCoords" [call-arg] (diff)
E Alignment of first line difference:
E E: main:7: error: Unexpected keyword argument "kw" for "pipe" of
"DataWithC...
E A: ../../<<PKGBUILDDIR>>/.pybuild/cpytho...
E ^
__________________ test_mypy_pipe_function_unexpected_keyword __________________
[gw1] linux -- Python 3.13.7 /usr/bin/python3.13
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_dataset_typing.yml:117:
E pytest_mypy_plugins.utils.TypecheckAssertionError: Invalid output:
E Actual:
E
../../<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/core/common:
note: "pipe" of "DataWithCoords" defined here (diff)
E main:7: error: Unexpected keyword argument "kw" for "pipe" of
"DataWithCoords" [call-arg] (diff)
E Expected:
E main:7: error: Unexpected keyword argument "kw" for "pipe" of
"DataWithCoords" [call-arg] (diff)
E Alignment of first line difference:
E E: main:7: error: Unexpected keyword argument "kw" for "pipe" of
"DataWithC...
E A: ../../<<PKGBUILDDIR>>/.pybuild/cpytho...
E ^
__________________ test_mypy_pipe_function_unexpected_keyword __________________
[gw1] linux -- Python 3.13.7 /usr/bin/python3.13
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_datatree_typing.yml:117:
E pytest_mypy_plugins.utils.TypecheckAssertionError: Invalid output:
E Actual:
E
../../<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/core/datatree:
note: "pipe" of "DataTree" defined here (diff)
E main:7: error: Unexpected keyword argument "kw" for "pipe" of "DataTree"
[call-arg] (diff)
E Expected:
E main:7: error: Unexpected keyword argument "kw" for "pipe" of "DataTree"
[call-arg] (diff)
E Alignment of first line difference:
E E: main:7: error: Unexpected keyword argument "kw" for "pipe" of
"DataTree"...
E A: ../../<<PKGBUILDDIR>>/.pybuild/cpytho...
E ^
=============================== warnings summary ===============================
xarray/tests/test_conventions.py::TestEncodeCFVariable::test_missing_fillvalue
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/core/duck_array_ops.py:250:
RuntimeWarning: invalid value encountered in cast
return data.astype(dtype, **kwargs)
xarray/tests/test_dask.py: 12 warnings
xarray/tests/test_units.py: 10 warnings
/usr/lib/python3/dist-packages/numpy/_core/numeric.py:442: RuntimeWarning:
invalid value encountered in cast
multiarray.copyto(res, fill_value, casting='unsafe')
xarray/tests/test_duck_array_wrapping.py::TestDataArrayMethods::test_astype[pint]
/usr/lib/python3/dist-packages/pint/facets/numpy/quantity.py:88:
RuntimeWarning: invalid value encountered in cast
value = func(*args, **kwargs)
xarray/tests/test_duck_array_ops.py: 16 warnings
/usr/lib/python3/dist-packages/dask/array/core.py:5083: RuntimeWarning:
overflow encountered in scalar add
result = function(*args, **kwargs)
xarray/tests/test_duck_array_ops.py::test_cftime_datetime_mean[True]
/usr/lib/python3/dist-packages/dask/array/core.py:5083: DeprecationWarning:
Bitwise inversion '~' on bool is deprecated and will be removed in Python 3.16.
This returns the bitwise inversion of the underlying int object and is usually
not what you expect from negating a bool. Use the 'not' operator for boolean
negation or ~int(x) if you really want the bitwise inversion of the underlying
int.
result = function(*args, **kwargs)
xarray/tests/test_strategies.py::TestReduction::test_mean
xarray/tests/test_strategies.py::TestReduction::test_mean
/usr/lib/python3/dist-packages/numpy/_core/fromnumeric.py:86: RuntimeWarning:
invalid value encountered in reduce
return ufunc.reduce(obj, axis, dtype, out, **passkwargs)
xarray/tests/test_strategies.py::TestReduction::test_mean
xarray/tests/test_strategies.py::TestReduction::test_mean
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_strategies.py:278:
RuntimeWarning: Mean of empty slice
expected = np.nanmean(var.data, axis=reduction_axes)
xarray/tests/test_units.py::TestDataArray::test_missing_value_filling[int64-method_ffill]
xarray/tests/test_units.py::TestDataArray::test_missing_value_filling[int64-method_bfill]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_units.py:2784:
RuntimeWarning: invalid value encountered in cast
np.array([1.4, np.nan, 2.3, np.nan, np.nan, 9.1]).astype(dtype)
xarray/tests/test_units.py: 15 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_units.py:2821:
RuntimeWarning: invalid value encountered in cast
np.array([1.4, np.nan, 2.3, np.nan, np.nan, 9.1]).astype(dtype)
xarray/tests/test_units.py::TestDataArray::test_dropna[int64]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_units.py:2849:
RuntimeWarning: invalid value encountered in cast
np.array([1.4, np.nan, 2.3, np.nan, np.nan, 9.1]).astype(dtype)
xarray/tests/test_units.py::TestDataArray::test_isin[int64-no_unit]
xarray/tests/test_units.py::TestDataArray::test_isin[int64-dimensionless]
xarray/tests/test_units.py::TestDataArray::test_isin[int64-incompatible_unit]
xarray/tests/test_units.py::TestDataArray::test_isin[int64-compatible_unit]
xarray/tests/test_units.py::TestDataArray::test_isin[int64-identical_unit]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_units.py:2874:
RuntimeWarning: invalid value encountered in cast
np.array([1.4, np.nan, 2.3, np.nan, np.nan, 9.1]).astype(dtype)
xarray/tests/test_units.py::TestDataArray::test_isin[int64-no_unit]
xarray/tests/test_units.py::TestDataArray::test_isin[int64-dimensionless]
xarray/tests/test_units.py::TestDataArray::test_isin[int64-incompatible_unit]
xarray/tests/test_units.py::TestDataArray::test_isin[int64-compatible_unit]
xarray/tests/test_units.py::TestDataArray::test_isin[int64-identical_unit]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_units.py:2879:
RuntimeWarning: invalid value encountered in cast
raw_values = np.array([1.4, np.nan, 2.3]).astype(dtype)
xarray/tests/test_units.py::TestDataset::test_missing_value_filling[int64-method_ffill]
xarray/tests/test_units.py::TestDataset::test_missing_value_filling[int64-method_bfill]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_units.py:4270:
RuntimeWarning: invalid value encountered in cast
np.array([1.4, np.nan, 2.3, np.nan, np.nan, 9.1]).astype(dtype)
xarray/tests/test_units.py::TestDataset::test_missing_value_filling[int64-method_ffill]
xarray/tests/test_units.py::TestDataset::test_missing_value_filling[int64-method_bfill]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_units.py:4274:
RuntimeWarning: invalid value encountered in cast
np.array([4.3, 9.8, 7.5, np.nan, 8.2, np.nan]).astype(dtype)
xarray/tests/test_units.py: 15 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_units.py:4313:
RuntimeWarning: invalid value encountered in cast
np.array([1.4, np.nan, 2.3, np.nan, np.nan, 9.1]).astype(dtype)
xarray/tests/test_units.py: 15 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_units.py:4317:
RuntimeWarning: invalid value encountered in cast
np.array([4.3, 9.8, 7.5, np.nan, 8.2, np.nan]).astype(dtype)
xarray/tests/test_units.py::TestDataset::test_dropna[int64]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_units.py:4343:
RuntimeWarning: invalid value encountered in cast
np.array([1.4, np.nan, 2.3, np.nan, np.nan, 9.1]).astype(dtype)
xarray/tests/test_units.py::TestDataset::test_dropna[int64]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_units.py:4347:
RuntimeWarning: invalid value encountered in cast
np.array([4.3, 9.8, 7.5, np.nan, 8.2, np.nan]).astype(dtype)
xarray/tests/test_units.py::TestDataset::test_isin[int64-no_unit]
xarray/tests/test_units.py::TestDataset::test_isin[int64-dimensionless]
xarray/tests/test_units.py::TestDataset::test_isin[int64-incompatible_unit]
xarray/tests/test_units.py::TestDataset::test_isin[int64-compatible_unit]
xarray/tests/test_units.py::TestDataset::test_isin[int64-same_unit]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_units.py:4371:
RuntimeWarning: invalid value encountered in cast
np.array([1.4, np.nan, 2.3, np.nan, np.nan, 9.1]).astype(dtype)
xarray/tests/test_units.py::TestDataset::test_isin[int64-no_unit]
xarray/tests/test_units.py::TestDataset::test_isin[int64-dimensionless]
xarray/tests/test_units.py::TestDataset::test_isin[int64-incompatible_unit]
xarray/tests/test_units.py::TestDataset::test_isin[int64-compatible_unit]
xarray/tests/test_units.py::TestDataset::test_isin[int64-same_unit]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_units.py:4375:
RuntimeWarning: invalid value encountered in cast
np.array([4.3, 9.8, 7.5, np.nan, 8.2, np.nan]).astype(dtype)
xarray/tests/test_units.py::TestDataset::test_isin[int64-no_unit]
xarray/tests/test_units.py::TestDataset::test_isin[int64-dimensionless]
xarray/tests/test_units.py::TestDataset::test_isin[int64-incompatible_unit]
xarray/tests/test_units.py::TestDataset::test_isin[int64-compatible_unit]
xarray/tests/test_units.py::TestDataset::test_isin[int64-same_unit]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_units.py:4380:
RuntimeWarning: invalid value encountered in cast
raw_values = np.array([1.4, np.nan, 2.3]).astype(dtype)
xarray/tests/test_units.py::TestDataset::test_interpolate_na[int64]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_units.py:4456:
RuntimeWarning: invalid value encountered in cast
np.array([1.4, np.nan, 2.3, np.nan, np.nan, 9.1]).astype(dtype)
xarray/tests/test_units.py::TestDataset::test_interpolate_na[int64]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_units.py:4460:
RuntimeWarning: invalid value encountered in cast
np.array([4.3, 9.8, 7.5, np.nan, 8.2, np.nan]).astype(dtype)
xarray/tests/test_units.py::TestDataset::test_combine_first[int64-data-no_unit]
xarray/tests/test_units.py::TestDataset::test_combine_first[int64-data-dimensionless]
xarray/tests/test_units.py::TestDataset::test_combine_first[int64-data-incompatible_unit]
xarray/tests/test_units.py::TestDataset::test_combine_first[int64-data-compatible_unit]
xarray/tests/test_units.py::TestDataset::test_combine_first[int64-data-same_unit]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_units.py:4505:
RuntimeWarning: invalid value encountered in cast
np.array([1.4, np.nan, 2.3, np.nan, np.nan, 9.1]).astype(dtype) * data_unit
xarray/tests/test_units.py::TestDataset::test_combine_first[int64-data-no_unit]
xarray/tests/test_units.py::TestDataset::test_combine_first[int64-data-dimensionless]
xarray/tests/test_units.py::TestDataset::test_combine_first[int64-data-incompatible_unit]
xarray/tests/test_units.py::TestDataset::test_combine_first[int64-data-compatible_unit]
xarray/tests/test_units.py::TestDataset::test_combine_first[int64-data-same_unit]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build/xarray/tests/test_units.py:4508:
RuntimeWarning: invalid value encountered in cast
np.array([4.3, 9.8, 7.5, np.nan, 8.2, np.nan]).astype(dtype) * data_unit
xarray/tests/test_weighted.py::test_weighted_quantile_3D[True-True-q1-a]
xarray/tests/test_weighted.py::test_weighted_quantile_3D[True-True-q1-b]
/usr/lib/python3/dist-packages/numpy/lib/_nanfunctions_impl.py:1620:
RuntimeWarning: All-NaN slice encountered
return fnb._ureduce(a,
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
=========================== short test summary info ============================
FAILED
xarray/tests/test_dataarray_typing.yml::test_mypy_pipe_function_unexpected_keyword
FAILED
xarray/tests/test_dataset_typing.yml::test_mypy_pipe_function_unexpected_keyword
FAILED
xarray/tests/test_datatree_typing.yml::test_mypy_pipe_function_unexpected_keyword
= 3 failed, 19104 passed, 2638 skipped, 199 xfailed, 98 xpassed, 138 warnings
in 168.67s (0:02:48) =
E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_xarray/build; python3.13 -m pytest -n2
--deselect=xarray/tests/test_weighted.py::test_weighted_operations_keep_attr
--deselect=xarray/tests/test_variable.py::TestVariable::test_reduce_keepdims
--deselect=xarray/tests/test_backends.py::test_zarr_region_chunk_partial_offset
--deselect=xarray/tests/test_backends.py::test_chunk_encoding_with_dask
--pyargs xarray
rm -fr -- /tmp/dh-xdg-rundir-KINz0UmW
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.13
returned exit code 13
make: *** [debian/rules:52: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
--- End Message ---
pgpbj0xi8YAPk.pgp
