Package: src:pykdtree Version: 1.4.3+ds-1 Severity: serious Tags: ftbfs forky sid
Dear maintainer: During a rebuild of all packages in unstable, your package failed to build. Below you will find how the build ends (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202509/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you could not reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:pykdtree, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild debian/rules execute_after_dh_auto_configure make[1]: Entering directory '/<<PKGBUILDDIR>>' cython3 pykdtree/kdtree.pyx /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<<PKGBUILDDIR>>/pykdtree/kdtree.pyx tree = Parsing.p_module(s, pxd, full_module_name) cd pykdtree && python3 render_template.py make[1]: Leaving directory '/<<PKGBUILDDIR>>' dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pykdtree * Building wheel... running bdist_wheel running build running build_py creating build/lib.linux-x86_64-cpython-313/pykdtree copying pykdtree/__init__.py -> build/lib.linux-x86_64-cpython-313/pykdtree copying pykdtree/test_tree.py -> build/lib.linux-x86_64-cpython-313/pykdtree copying pykdtree/test_stub.py -> build/lib.linux-x86_64-cpython-313/pykdtree copying pykdtree/render_template.py -> build/lib.linux-x86_64-cpython-313/pykdtree copying pykdtree/kdtree.pyi -> build/lib.linux-x86_64-cpython-313/pykdtree copying pykdtree/py.typed -> build/lib.linux-x86_64-cpython-313/pykdtree running build_ext Will use gomp for OpenMP. Compiler: unix / OpenMP: gomp / OpenMP compile args: ['-fopenmp'] / OpenMP link args: ['-lgomp'] building 'pykdtree.kdtree' extension creating build/temp.linux-x86_64-cpython-313/pykdtree x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_25_API_VERSION -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c pykdtree/_kdtree_core.c -o build/temp.linux-x86_64-cpython-313/pykdtree/_kdtree_core.o -std=c17 -O3 -fopenmp x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_25_API_VERSION -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c pykdtree/kdtree.c -o build/temp.linux-x86_64-cpython-313/pykdtree/kdtree.o -std=c17 -O3 -fopenmp x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/pykdtree/_kdtree_core.o build/temp.linux-x86_64-cpython-313/pykdtree/kdtree.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/pykdtree/kdtree.cpython-313-x86_64-linux-gnu.so -lgomp installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/pykdtree copying build/lib.linux-x86_64-cpython-313/pykdtree/__init__.py -> build/bdist.linux-x86_64/wheel/./pykdtree copying build/lib.linux-x86_64-cpython-313/pykdtree/test_tree.py -> build/bdist.linux-x86_64/wheel/./pykdtree copying build/lib.linux-x86_64-cpython-313/pykdtree/kdtree.pyi -> build/bdist.linux-x86_64/wheel/./pykdtree copying build/lib.linux-x86_64-cpython-313/pykdtree/kdtree.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./pykdtree copying build/lib.linux-x86_64-cpython-313/pykdtree/test_stub.py -> build/bdist.linux-x86_64/wheel/./pykdtree copying build/lib.linux-x86_64-cpython-313/pykdtree/py.typed -> build/bdist.linux-x86_64/wheel/./pykdtree copying build/lib.linux-x86_64-cpython-313/pykdtree/render_template.py -> build/bdist.linux-x86_64/wheel/./pykdtree running install_egg_info running egg_info creating pykdtree.egg-info writing pykdtree.egg-info/PKG-INFO writing dependency_links to pykdtree.egg-info/dependency_links.txt writing requirements to pykdtree.egg-info/requires.txt writing top-level names to pykdtree.egg-info/top_level.txt writing manifest file 'pykdtree.egg-info/SOURCES.txt' reading manifest file 'pykdtree.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.txt' writing manifest file 'pykdtree.egg-info/SOURCES.txt' Copying pykdtree.egg-info to build/bdist.linux-x86_64/wheel/./pykdtree-1.4.3.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/pykdtree-1.4.3.dist-info/WHEEL creating '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pykdtree/.tmp-atgbszg1/pykdtree-1.4.3-cp313-cp313-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'pykdtree/__init__.py' adding 'pykdtree/kdtree.cpython-313-x86_64-linux-gnu.so' adding 'pykdtree/kdtree.pyi' adding 'pykdtree/py.typed' adding 'pykdtree/render_template.py' adding 'pykdtree/test_stub.py' adding 'pykdtree/test_tree.py' adding 'pykdtree-1.4.3.dist-info/licenses/LICENSE.txt' adding 'pykdtree-1.4.3.dist-info/METADATA' adding 'pykdtree-1.4.3.dist-info/WHEEL' adding 'pykdtree-1.4.3.dist-info/top_level.txt' adding 'pykdtree-1.4.3.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built pykdtree-1.4.3-cp313-cp313-linux_x86_64.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pykdtree/build; python3.13 -m pytest --pyargs pykdtree ============================= test session starts ============================== platform linux -- Python 3.13.7, pytest-8.4.2, pluggy-1.6.0 rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pykdtree/build configfile: pyproject.toml plugins: typeguard-4.4.4 collected 20 items pykdtree/test_stub.py F [ 5%] pykdtree/test_tree.py .................ss [100%] =================================== FAILURES =================================== __________________________________ test_mypy ___________________________________ capsys = <_pytest.capture.CaptureFixture object at 0x7f462966f4d0> def test_mypy(capsys: CaptureFixture[str]) -> None: """ Run mypy stub tests for pykdtree. This function checks for: - Type consistency in the stubs vs the definitions - Function / property signatures - Missing functions or properties in the stubs """ from mypy import stubtest code = stubtest.test_stubs(stubtest.parse_options(["pykdtree.kdtree"])) captured = capsys.readouterr() > assert code == 0, "Mypy stub test failed:\n" + captured.out E AssertionError: Mypy stub test failed: E error: pykdtree.kdtree.KDTree is a disjoint base at runtime, but isn't marked with @disjoint_base in the stub E Stub: in file /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pykdtree/build/pykdtree/kdtree.pyi:21 E <TypeInfo pykdtree.kdtree.KDTree> E Runtime: E <class 'pykdtree.kdtree.KDTree'> E E Found 1 error (checked 1 module) E E assert 1 == 0 pykdtree/test_stub.py:17: AssertionError =========================== short test summary info ============================ FAILED pykdtree/test_stub.py::test_mypy - AssertionError: Mypy stub test failed: =================== 1 failed, 17 passed, 2 skipped in 2.23s ==================== E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pykdtree/build; python3.13 -m pytest --pyargs pykdtree dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.13 returned exit code 13 make: *** [debian/rules:14: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 --------------------------------------------------------------------------------
