Package: src:blimps Version: 3.9+ds-4 Severity: serious Tags: ftbfs forky sid
Dear maintainer: During a rebuild of all packages in unstable, your package failed to build. Below you will find how the build ends (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202509/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you could not reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:blimps, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] debian/rules clean dh clean dh_auto_clean make -j2 distclean make[1]: Entering directory '/<<PKGBUILDDIR>>' if [ -d blimps ]; then make -C blimps -f Makefile.Linux clean; fi if [ -d protomat ]; then make -C protomat -f Makefile.Linux clean; fi make[2]: Entering directory '/<<PKGBUILDDIR>>/protomat' /bin/rm -f *.o blksort getblock getseq multimat motifj motomat uextract blosum blastdat make[2]: Entering directory '/<<PKGBUILDDIR>>/blimps' rm -f blimps blweight blalign bldist blk2pssm rank_matrix retblock codehop htmlize-codehop oligo_melt mablock makeblockmap prints2blocks lisblk coduse narrow blkprob blk2slx LAMA find_biassed_blocks fastaseqs addseqs cobbler interpro pssmdist pssmBL papssm matrix_logob makelogob blocks_search LAMA_search block_vis format_block biassed_blocks_finder htmlize-LAMA show_aligned_blocks makelis blk2mot make[2]: Leaving directory '/<<PKGBUILDDIR>>/protomat' rm -f *.a *.o *~ if [ "." != "." ]; then rm -f -r .; fi [... snipped ...] In file included from blimps.c:29: config.h:28:12: note: declared here 28 | extern int read_config_file (); | ^~~~~~~~~~~~~~~~ blimps.c:918:3: error: too many arguments to function âinit_reclaim_spaceâ; expected 0, have 1 918 | init_reclaim_space(blimps_reclaim_space); | ^~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~ In file included from ../include/global.h:53: ../include/memory.h:117:13: note: declared here 117 | extern void init_reclaim_space(); | ^~~~~~~~~~~~~~~~~~ blimps.c:926:7: error: too many arguments to function ânumber_of_filesâ; expected 0, have 1 926 | if (number_of_files(FREQUENCY_FILE) <= 0) { | ^~~~~~~~~~~~~~~ ../include/files.h:133:12: note: declared here 133 | extern int number_of_files(); | ^~~~~~~~~~~~~~~ blimps.c:944:20: error: too many arguments to function âget_current_file_nameâ; expected 0, have 1 944 | strcpy(Buffer, get_current_file_name(FREQUENCY_FILE)); | ^~~~~~~~~~~~~~~~~~~~~ ../include/files.h:108:14: note: declared here 108 | extern char *get_current_file_name(); | ^~~~~~~~~~~~~~~~~~~~~ blimps.c:948:3: error: too many arguments to function âErrorReportâ; expected 0, have 1 948 | ErrorReport(INFO_ERR_LVL); | ^~~~~~~~~~~ ../include/errors.h:62:13: note: declared here 62 | extern void ErrorReport(); | ^~~~~~~~~~~ blimps.c:950:9: error: too many arguments to function âload_frequenciesâ; expected 0, have 1 950 | if (! load_frequencies(Buffer)) { | ^~~~~~~~~~~~~~~~ ~~~~~~ In file included from blimps.c:23: ../include/frequency.h:40:16: note: declared here 40 | extern Boolean load_frequencies(); | ^~~~~~~~~~~~~~~~ blimps.c:952:5: error: too many arguments to function âErrorReportâ; expected 0, have 1 952 | ErrorReport(SERIOUS_ERR_LVL); | ^~~~~~~~~~~ ../include/errors.h:62:13: note: declared here 62 | extern void ErrorReport(); | ^~~~~~~~~~~ blimps.c:965:11: error: too many arguments to function âget_option_argsâ; expected 0, have 3 965 | if (! get_option_args("alts", & qargc, & qargv)) { | ^~~~~~~~~~~~~~~ ~~~~~~ In file included from blimps.c:24: ../include/options.h:67:16: note: declared here 67 | extern Boolean get_option_args(); | ^~~~~~~~~~~~~~~ blimps.c:968:7: error: too many arguments to function âErrorReportâ; expected 0, have 1 968 | ErrorReport(WARNING_ERR_LVL); | ^~~~~~~~~~~ ../include/errors.h:62:13: note: declared here 62 | extern void ErrorReport(); | ^~~~~~~~~~~ blimps.c:982:7: error: too many arguments to function âErrorReportâ; expected 0, have 1 982 | ErrorReport(FATAL_ERR_LVL); | ^~~~~~~~~~~ ../include/errors.h:62:13: note: declared here 62 | extern void ErrorReport(); | ^~~~~~~~~~~ blimps.c:985:11: error: too many arguments to function âload_qijâ; expected 0, have 1 985 | Qij = load_qij(fqij); | ^~~~~~~~ ~~~~ ../include/convert.h:58:26: note: declared here 58 | extern struct float_qij *load_qij(); | ^~~~~~~~ blimps.c:989:5: error: too many arguments to function âErrorReportâ; expected 0, have 1 989 | ErrorReport(INFO_ERR_LVL); | ^~~~~~~~~~~ ../include/errors.h:62:13: note: declared here 62 | extern void ErrorReport(); | ^~~~~~~~~~~ blimps.c:999:5: error: too many arguments to function âErrorReportâ; expected 0, have 1 999 | ErrorReport(WARNING_ERR_LVL); | ^~~~~~~~~~~ ../include/errors.h:62:13: note: declared here 62 | extern void ErrorReport(); | ^~~~~~~~~~~ blimps.c:1005:3: error: too many arguments to function âErrorReportâ; expected 0, have 1 1005 | ErrorReport(INFO_ERR_LVL); | ^~~~~~~~~~~ ../include/errors.h:62:13: note: declared here 62 | extern void ErrorReport(); | ^~~~~~~~~~~ blimps.c:1006:3: error: too many arguments to function âinit_gcodeâ; expected 0, have 3 1006 | init_gcode(&gcodes[GeneticCodeInitializer], gcode, revgcode); | ^~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/residues.h:16, from blimps.c:18: ../include/gcode.h:96:6: note: declared here 96 | void init_gcode PROTO((GeneticCodePtr, unsigned char [64], unsigned char [64])); | ^~~~~~~~~~ blimps.c:1017:7: error: too many arguments to function âErrorReportâ; expected 0, have 1 1017 | ErrorReport(FATAL_ERR_LVL); | ^~~~~~~~~~~ ../include/errors.h:62:13: note: declared here 62 | extern void ErrorReport(); | ^~~~~~~~~~~ blimps.c:1034:7: error: too many arguments to function âErrorReportâ; expected 0, have 1 1034 | ErrorReport(SERIOUS_ERR_LVL); | ^~~~~~~~~~~ ../include/errors.h:62:13: note: declared here 62 | extern void ErrorReport(); | ^~~~~~~~~~~ blimps.c:1037:7: error: too many arguments to function âErrorReportâ; expected 0, have 1 1037 | ErrorReport(SERIOUS_ERR_LVL); | ^~~~~~~~~~~ ../include/errors.h:62:13: note: declared here 62 | extern void ErrorReport(); | ^~~~~~~~~~~ blimps.c:1078:5: error: too many arguments to function âErrorReportâ; expected 0, have 1 1078 | ErrorReport(PROGRAM_ERR_LVL); | ^~~~~~~~~~~ ../include/errors.h:62:13: note: declared here 62 | extern void ErrorReport(); | ^~~~~~~~~~~ blimps.c:1081:5: error: too many arguments to function âErrorReportâ; expected 0, have 1 1081 | ErrorReport(PROGRAM_ERR_LVL); | ^~~~~~~~~~~ ../include/errors.h:62:13: note: declared here 62 | extern void ErrorReport(); | ^~~~~~~~~~~ blimps.c:1084:5: error: too many arguments to function âErrorReportâ; expected 0, have 1 1084 | ErrorReport(PROGRAM_ERR_LVL); | ^~~~~~~~~~~ ../include/errors.h:62:13: note: declared here 62 | extern void ErrorReport(); | ^~~~~~~~~~~ blimps.c:1087:5: error: too many arguments to function âErrorReportâ; expected 0, have 1 1087 | ErrorReport(PROGRAM_ERR_LVL); | ^~~~~~~~~~~ ../include/errors.h:62:13: note: declared here 62 | extern void ErrorReport(); | ^~~~~~~~~~~ blimps.c:1097:3: error: too many arguments to function âprint_versionâ; expected 0, have 1 1097 | print_version(ofp); | ^~~~~~~~~~~~~ ~~~ ../include/version.h:112:13: note: declared here 112 | extern void print_version(); | ^~~~~~~~~~~~~ blimps.c:1123:38: error: too many arguments to function âget_file_nameâ; expected 0, have 2 1123 | fprintf(ofp, "Probe File: %s\n", get_file_name(0, SEQUENCE_FILES)); | ^~~~~~~~~~~~~ ~ ../include/files.h:121:7: note: declared here 121 | char *get_file_name(); | ^~~~~~~~~~~~~ blimps.c:1126:46: error: too many arguments to function âget_file_nameâ; expected 0, have 2 1126 | fprintf(ofp, "Target File (s) : %s\n", get_file_name(0, BLOCK_FILES)); | ^~~~~~~~~~~~~ ~ ../include/files.h:121:7: note: declared here 121 | char *get_file_name(); | ^~~~~~~~~~~~~ blimps.c:1127:18: error: too many arguments to function ânumber_of_filesâ; expected 0, have 1 1127 | for(i=1; i<number_of_files(BLOCK_FILES); i++) { | ^~~~~~~~~~~~~~~ ../include/files.h:133:12: note: declared here 133 | extern int number_of_files(); | ^~~~~~~~~~~~~~~ blimps.c:1128:48: error: too many arguments to function âget_file_nameâ; expected 0, have 2 1128 | fprintf(ofp, " %s\n", get_file_name(i, BLOCK_FILES)); | ^~~~~~~~~~~~~ ~ ../include/files.h:121:7: note: declared here 121 | char *get_file_name(); | ^~~~~~~~~~~~~ blimps.c:1132:46: error: too many arguments to function âget_file_nameâ; expected 0, have 2 1132 | fprintf(ofp, "Target File (s) : %s\n", get_file_name(0, MATRIX_FILES)); | ^~~~~~~~~~~~~ ~ ../include/files.h:121:7: note: declared here 121 | char *get_file_name(); | ^~~~~~~~~~~~~ blimps.c:1133:18: error: too many arguments to function ânumber_of_filesâ; expected 0, have 1 1133 | for(i=1; i<number_of_files(MATRIX_FILES); i++) { | ^~~~~~~~~~~~~~~ ../include/files.h:133:12: note: declared here 133 | extern int number_of_files(); | ^~~~~~~~~~~~~~~ blimps.c:1134:48: error: too many arguments to function âget_file_nameâ; expected 0, have 2 1134 | fprintf(ofp, " %s\n", get_file_name(i, MATRIX_FILES)); | ^~~~~~~~~~~~~ ~ ../include/files.h:121:7: note: declared here 121 | char *get_file_name(); | ^~~~~~~~~~~~~ blimps.c:1150:40: error: too many arguments to function âget_file_nameâ; expected 0, have 2 1150 | fprintf(ofp, "Block File: %s\n", get_file_name(0, BLOCK_FILES)); | ^~~~~~~~~~~~~ ~ ../include/files.h:121:7: note: declared here 121 | char *get_file_name(); | ^~~~~~~~~~~~~ blimps.c:1153:41: error: too many arguments to function âget_file_nameâ; expected 0, have 2 1153 | fprintf(ofp, "Matrix File: %s\n", get_file_name(0, MATRIX_FILES)); | ^~~~~~~~~~~~~ ~ ../include/files.h:121:7: note: declared here 121 | char *get_file_name(); | ^~~~~~~~~~~~~ blimps.c:1156:44: error: too many arguments to function âget_file_nameâ; expected 0, have 2 1156 | fprintf(ofp, "Target File (s) : %s\n", get_file_name(0, SEQUENCE_FILES)); | ^~~~~~~~~~~~~ ~ ../include/files.h:121:7: note: declared here 121 | char *get_file_name(); | ^~~~~~~~~~~~~ blimps.c:1157:16: error: too many arguments to function ânumber_of_filesâ; expected 0, have 1 1157 | for(i=1; i<number_of_files(SEQUENCE_FILES); i++) { | ^~~~~~~~~~~~~~~ ../include/files.h:133:12: note: declared here 133 | extern int number_of_files(); | ^~~~~~~~~~~~~~~ blimps.c:1158:46: error: too many arguments to function âget_file_nameâ; expected 0, have 2 1158 | fprintf(ofp, " %s\n", get_file_name(i, SEQUENCE_FILES)); | ^~~~~~~~~~~~~ ~ ../include/files.h:121:7: note: declared here 121 | char *get_file_name(); | ^~~~~~~~~~~~~ blimps.c:1171:48: error: too many arguments to function âget_file_nameâ; expected 0, have 2 1171 | fprintf(ofp, "Block File (s) : %s\n", get_file_name(0, BLOCK_FILES)); | ^~~~~~~~~~~~~ ~ ../include/files.h:121:7: note: declared here 121 | char *get_file_name(); | ^~~~~~~~~~~~~ blimps.c:1172:18: error: too many arguments to function ânumber_of_filesâ; expected 0, have 1 1172 | for(i=1; i<number_of_files(BLOCK_FILES); i++) { | ^~~~~~~~~~~~~~~ ../include/files.h:133:12: note: declared here 133 | extern int number_of_files(); | ^~~~~~~~~~~~~~~ blimps.c:1173:49: error: too many arguments to function âget_file_nameâ; expected 0, have 2 1173 | fprintf(ofp, " %s\n", get_file_name(i, BLOCK_FILES)); | ^~~~~~~~~~~~~ ~ ../include/files.h:121:7: note: declared here 121 | char *get_file_name(); | ^~~~~~~~~~~~~ blimps.c:1177:48: error: too many arguments to function âget_file_nameâ; expected 0, have 2 1177 | fprintf(ofp, "Matrix File (s) : %s\n",get_file_name(0, MATRIX_FILES)); | ^~~~~~~~~~~~~ ~ ../include/files.h:121:7: note: declared here 121 | char *get_file_name(); | ^~~~~~~~~~~~~ blimps.c:1178:18: error: too many arguments to function ânumber_of_filesâ; expected 0, have 1 1178 | for(i=1; i<number_of_files(MATRIX_FILES); i++) { | ^~~~~~~~~~~~~~~ ../include/files.h:133:12: note: declared here 133 | extern int number_of_files(); | ^~~~~~~~~~~~~~~ blimps.c:1179:48: error: too many arguments to function âget_file_nameâ; expected 0, have 2 1179 | fprintf(ofp, " %s\n",get_file_name(i, MATRIX_FILES)); | ^~~~~~~~~~~~~ ~ ../include/files.h:121:7: note: declared here 121 | char *get_file_name(); | ^~~~~~~~~~~~~ blimps.c:1184:46: error: too many arguments to function âget_file_nameâ; expected 0, have 2 1184 | fprintf(ofp, "Sequence File (s) : %s\n", get_file_name(0, SEQUENCE_FILES)); | ^~~~~~~~~~~~~ ~ ../include/files.h:121:7: note: declared here 121 | char *get_file_name(); | ^~~~~~~~~~~~~ blimps.c:1185:16: error: too many arguments to function ânumber_of_filesâ; expected 0, have 1 1185 | for(i=1; i<number_of_files(SEQUENCE_FILES); i++) { | ^~~~~~~~~~~~~~~ ../include/files.h:133:12: note: declared here 133 | extern int number_of_files(); | ^~~~~~~~~~~~~~~ blimps.c:1186:47: error: too many arguments to function âget_file_nameâ; expected 0, have 2 1186 | fprintf(ofp, " %s\n", get_file_name(i, SEQUENCE_FILES)); | ^~~~~~~~~~~~~ ~ ../include/files.h:121:7: note: declared here 121 | char *get_file_name(); | ^~~~~~~~~~~~~ blimps.c:1197:3: error: too many arguments to function âoutput_scoresâ; expected 0, have 2 1197 | output_scores(NumberToReport, ofp); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~~ scores.h:116:13: note: declared here 116 | extern void output_scores(); | ^~~~~~~~~~~~~ make[2]: *** [<builtin>: blimps.o] Error 1 make[2]: Leaving directory '/<<PKGBUILDDIR>>/blimps' make[1]: *** [Makefile:17: blimps] Error 2 make[1]: Leaving directory '/<<PKGBUILDDIR>>' dh_auto_build: error: make -j2 "INSTALL=install --strip-program=true" returned exit code 2 make: *** [debian/rules:13: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 --------------------------------------------------------------------------------
