Package: src:isospec Version: 2.2.1-4.1 Severity: serious Tags: ftbfs forky sid
Dear maintainer: During a rebuild of all packages in unstable, your package failed to build. Below you will find how the build ends (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202509/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you could not reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:isospec, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] debian/rules clean dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core dh clean --with python3 dh_auto_clean make -j2 clean make[1]: Entering directory '/<<PKGBUILDDIR>>' rm -rf IsoSpecPy.egg-info build dist make[1]: Leaving directory '/<<PKGBUILDDIR>>' debian/rules override_dh_clean make[1]: Entering directory '/<<PKGBUILDDIR>>' dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core rm -rf obj-x86_64-linux-gnu [... snipped ...] LaTeX Warning: Reference `class_iso_spec_1_1_conf_order_marginal' on page 5 und efined on input line 6. LaTeX Warning: Reference `class_iso_spec_1_1_conf_order_marginal_descending' on page 5 undefined on input line 7. LaTeX Warning: Reference `class_iso_spec_1_1_dirty_allocator' on page 5 undefin ed on input line 8. LaTeX Warning: Reference `class_iso_spec_1_1_fixed_envelope' on page 5 undefine d on input line 9. LaTeX Warning: Reference `class_iso_spec_1_1_iso' on page 5 undefined on input line 10. LaTeX Warning: Reference `class_iso_spec_1_1_iso_generator' on page 5 undefined on input line 11. LaTeX Warning: Reference `class_iso_spec_1_1_iso_layered_generator' on page 5 u ndefined on input line 12. LaTeX Warning: Reference `class_iso_spec_1_1_iso_ordered_generator' on page 5 u ndefined on input line 13. LaTeX Warning: Reference `class_iso_spec_1_1_iso_stochastic_generator' on page 5 undefined on input line 14. LaTeX Warning: Reference `class_iso_spec_1_1_iso_threshold_generator' on page 5 undefined on input line 15. LaTeX Warning: Reference `class_iso_spec_1_1_key_hasher' on page 5 undefined on input line 16. LaTeX Warning: Reference `class_iso_spec_1_1_layered_marginal' on page 5 undefi ned on input line 17. LaTeX Warning: Reference `class_iso_spec_1_1_marginal' on page 5 undefined on i nput line 18. LaTeX Warning: Reference `class_iso_spec_1_1_marginal_trek' on page 5 undefined on input line 19. LaTeX Warning: Reference `class_iso_spec_1_1_order_marginals_by_size_decresing' on page 5 undefined on input line 20. LaTeX Warning: Reference `classpod__vector' on page 5 undefined on input line 2 1. LaTeX Warning: Reference `class_iso_spec_1_1_precalculated_marginal' on page 5 undefined on input line 22. LaTeX Warning: Reference `struct_iso_spec_1_1_prob_and_conf_ptr' on page 5 unde fined on input line 23. LaTeX Warning: Reference `class_iso_spec_1_1_reverse_order' on page 5 undefined on input line 24. LaTeX Warning: Reference `class_iso_spec_1_1_s_summator' on page 5 undefined on input line 25. LaTeX Warning: Reference `class_iso_spec_1_1_summator' on page 5 undefined on i nput line 26. LaTeX Warning: Reference `class_iso_spec_1_1_table_order' on page 5 undefined o n input line 27. LaTeX Warning: Reference `class_iso_spec_1_1_t_summator' on page 5 undefined on input line 28. LaTeX Warning: Reference `classunsafe__pod__vector' on page 5 undefined on inpu t line 29. LaTeX Warning: Reference `structws__match__res' on page 5 undefined on input li ne 30. ) [5] [6] Chapter 4. (./files.tex LaTeX Warning: Reference `allocator_8cpp_source' on page 7 undefined on input l ine 3. LaTeX Warning: Reference `allocator_8h_source' on page 7 undefined on input lin e 4. LaTeX Warning: Reference `btrd_8h_source' on page 7 undefined on input line 5. LaTeX Warning: Reference `conf_8h_source' on page 7 undefined on input line 6. LaTeX Warning: Reference `cwrapper_8cpp_source' on page 7 undefined on input li ne 7. LaTeX Warning: Reference `cwrapper_8h_source' on page 7 undefined on input line 8. LaTeX Warning: Reference `dirty_allocator_8cpp_source' on page 7 undefined on i nput line 9. LaTeX Warning: Reference `dirty_allocator_8h_source' on page 7 undefined on inp ut line 10. LaTeX Warning: Reference `element__tables_8cpp_source' on page 7 undefined on i nput line 11. LaTeX Warning: Reference `element__tables_8h_source' on page 7 undefined on inp ut line 12. LaTeX Warning: Reference `fasta_8cpp_source' on page 7 undefined on input line 13. LaTeX Warning: Reference `fasta_8h_source' on page 7 undefined on input line 14 . LaTeX Warning: Reference `fixed_envelopes_8cpp_source' on page 7 undefined on i nput line 15. LaTeX Warning: Reference `fixed_envelopes_8h_source' on page 7 undefined on inp ut line 16. LaTeX Warning: Reference `iso_math_8cpp_source' on page 7 undefined on input li ne 17. LaTeX Warning: Reference `iso_math_8h_source' on page 7 undefined on input line 18. LaTeX Warning: Reference `iso_spec_09_09_8cpp_source' on page 7 undefined on in put line 19. LaTeX Warning: Reference `iso_spec_09_09_8h_source' on page 7 undefined on inpu t line 20. LaTeX Warning: Reference `marginal_trek_09_09_8cpp_source' on page 7 undefined on input line 21. LaTeX Warning: Reference `marginal_trek_09_09_8h_source' on page 7 undefined on input line 22. LaTeX Warning: Reference `misc_8cpp_source' on page 7 undefined on input line 2 3. LaTeX Warning: Reference `misc_8h_source' on page 7 undefined on input line 24. LaTeX Warning: Reference `mman_8cpp_source' on page 7 undefined on input line 2 5. LaTeX Warning: Reference `mman_8h_source' on page 7 undefined on input line 26. LaTeX Warning: Reference `operators_8cpp_source' on page 7 undefined on input l ine 27. LaTeX Warning: Reference `operators_8h_source' on page 7 undefined on input lin e 28. LaTeX Warning: Reference `platform_8h_source' on page 7 undefined on input line 29. LaTeX Warning: Reference `platform__incl_8h_source' on page 7 undefined on inpu t line 30. LaTeX Warning: Reference `pod__vector_8h_source' on page 7 undefined on input l ine 31. LaTeX Warning: Reference `python-build_8cpp_source' on page 7 undefined on inpu t line 32. LaTeX Warning: Reference `summator_8h_source' on page 7 undefined on input line 33. LaTeX Warning: Reference `unity-build_8cpp_source' on page 7 undefined on input line 34. ) [7] [8] Chapter 5. (./namespace_iso_spec.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd) [9] [10] Overfull \hbox (152.89105pt too wide) in paragraph at lines 201--203 []\T1/phv/m/n/10 const dou-ble [] = 1.[]144729885849400174143427351353058711647 294812915311571513623071472137769884826079783623270275489708 (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [11] [12] [13] [14] [15] [16] [17] [18] ! Undefined control sequence. <argument> ...rtpbox {\@nextchar }\insert@pcolumn \@endpbox \do@row@strut \o... l.660 \begin{DoxyParams}{Parameters} ? ! Emergency stop. <argument> ...rtpbox {\@nextchar }\insert@pcolumn \@endpbox \do@row@strut \o... l.660 \begin{DoxyParams}{Parameters} ! ==> Fatal error occurred, no output PDF file produced! Transcript written on refman.log. make[6]: *** [Makefile:12: refman.pdf] Error 1 make[6]: Leaving directory '/<<PKGBUILDDIR>>/man/latex' make[5]: *** [man/CMakeFiles/pdf_doc.dir/build.make:74: man/CMakeFiles/pdf_doc] Error 2 make[5]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make[4]: *** [CMakeFiles/Makefile2:191: man/CMakeFiles/pdf_doc.dir/all] Error 2 make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make[3]: *** [CMakeFiles/Makefile2:198: man/CMakeFiles/pdf_doc.dir/rule] Error 2 make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make[2]: *** [Makefile:185: pdf_doc] Error 2 make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' dh_auto_build: error: cd obj-x86_64-linux-gnu && make -j2 "INSTALL=install --strip-program=true" pdf_doc VERBOSE=1 returned exit code 2 make[1]: *** [debian/rules:81: build_cpp_library_doc] Error 25 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:29: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 --------------------------------------------------------------------------------
