Source: r-bioc-genomeinfodb Version: 1.42.3+dfsg-1 Severity: serious User: [email protected] Usertags: regression
Dear maintainer(s),Your package has an autopkgtest, great. However, it fails. Can you please investigate the situation and fix it? I copied some of the output at the bottom of this report.
The release team has announced [1] that failing autopkgtest on amd64 and arm64 are considered RC in testing.
More information about this bug and the reason for filing it can be found on https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
Paul [1] https://lists.debian.org/debian-devel-announce/2019/07/msg00002.html https://ci.debian.net/packages/r/r-bioc-genomeinfodb/testing/amd64/63135878/ 176s RUNIT TEST PROTOCOL -- Wed Aug 13 18:07:16 2025 176s *********************************************** 176s Number of test functions: 22 176s Number of errors: 2 176s Number of failures: 0 176s 176s 176s 1 Test Suite : 176s GenomeInfoDb RUnit Tests - 22 test functions, 2 errors, 0 failures176s ERROR in test_switching_Seqinfo_between_UCSC_and_NCBI_styles: Error in .map_UCSC_seqlevels_to_NCBI_seqlevels(UCSC_seqlevels, NCBI_seqlevels, :
176s 'special_mappings' contains sequence names not found in the NCBI 176s assembly176s ERROR in test_switching_Seqinfo_to_RefSeq_style: Error in .map_UCSC_seqlevels_to_NCBI_seqlevels(UCSC_seqlevels, NCBI_seqlevels, :
176s 'special_mappings' contains sequence names not found in the NCBI
176s assembly
176s
176s Test files with failing tests
176s
176s test_seqlevelsStyle.R
176s test_switching_Seqinfo_between_UCSC_and_NCBI_styles
176s test_switching_Seqinfo_to_RefSeq_style
176s
176s
176s Error in BiocGenerics:::testPackage("GenomeInfoDb") :
176s unit tests failed for package GenomeInfoDb
176s Calls: <Anonymous> -> <Anonymous>
176s Execution halted
176s autopkgtest [18:07:16]: test pkg-r-autopkgtest:
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