Source: biomaj3-core Version: 3.0.28-4 Severity: serious Justification: FTBFS Tags: forky sid ftbfs User: [email protected] Usertags: ftbfs-20250809 ftbfs-forky
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. The full build log is available from: http://qa-logs.debian.net/2025/08/09/biomaj3-core_3.0.28-4_unstable.log All bugs filed during this archive rebuild are listed at: https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20250809;[email protected] or: https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20250809&[email protected]&allbugs=1&cseverity=1&ctags=1&caffected=1#results A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime. -- Relevant part of the build log (hopefully): > debian/rules binary > dh binary --buildsystem=pybuild > dh_update_autotools_config -O--buildsystem=pybuild > dh_autoreconf -O--buildsystem=pybuild > dh_auto_configure -O--buildsystem=pybuild > I: pybuild base:311: python3.13 setup.py config > /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: > UserWarning: Unknown distribution option: 'tests_require' > warnings.warn(msg) > /usr/lib/python3/dist-packages/setuptools/dist.py:759: > SetuptoolsDeprecationWarning: License classifiers are deprecated. > !! > > > ******************************************************************************** > Please consider removing the following classifiers in favor of a SPDX > license expression: > > License :: OSI Approved :: GNU Affero General Public License v3 or > later (AGPLv3+) > > See > https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license > for details. > > ******************************************************************************** > > !! > self._finalize_license_expression() > running config > dh_auto_build -O--buildsystem=pybuild > I: pybuild base:311: /usr/bin/python3 setup.py build > /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: > UserWarning: Unknown distribution option: 'tests_require' > warnings.warn(msg) > /usr/lib/python3/dist-packages/setuptools/dist.py:759: > SetuptoolsDeprecationWarning: License classifiers are deprecated. > !! > > > ******************************************************************************** > Please consider removing the following classifiers in favor of a SPDX > license expression: > > License :: OSI Approved :: GNU Affero General Public License v3 or > later (AGPLv3+) > > See > https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license > for details. > > ******************************************************************************** > > !! > self._finalize_license_expression() > running build > running build_py > creating > /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.13_biomaj-core/build/biomaj_core > copying biomaj_core/utils.py -> > /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.13_biomaj-core/build/biomaj_core > copying biomaj_core/bmajindex.py -> > /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.13_biomaj-core/build/biomaj_core > copying biomaj_core/config.py -> > /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.13_biomaj-core/build/biomaj_core > copying biomaj_core/__init__.py -> > /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.13_biomaj-core/build/biomaj_core > running egg_info > creating biomaj_core.egg-info > writing biomaj_core.egg-info/PKG-INFO > writing dependency_links to biomaj_core.egg-info/dependency_links.txt > writing requirements to biomaj_core.egg-info/requires.txt > writing top-level names to biomaj_core.egg-info/top_level.txt > writing manifest file 'biomaj_core.egg-info/SOURCES.txt' > reading manifest file 'biomaj_core.egg-info/SOURCES.txt' > reading manifest template 'MANIFEST.in' > adding license file 'LICENSE' > writing manifest file 'biomaj_core.egg-info/SOURCES.txt' > copying biomaj_core/mimes-bio.txt -> > /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.13_biomaj-core/build/biomaj_core > dh_auto_test -O--buildsystem=pybuild > I: pybuild base:311: cd > /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.13_biomaj-core/build; > python3.13 -m pytest tests > ============================= test session starts > ============================== > platform linux -- Python 3.13.5, pytest-8.3.5, pluggy-1.5.0 > rootdir: /build/reproducible-path/biomaj3-core-3.0.28 > plugins: typeguard-4.4.2 > collected 0 items / 1 error > > ==================================== ERRORS > ==================================== > _ ERROR collecting > .pybuild/cpython3_3.13_biomaj-core/build/tests/test_biomaj.py _ > ImportError while importing test module > '/build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.13_biomaj-core/build/tests/test_biomaj.py'. > Hint: make sure your test modules/packages have valid Python names. > Traceback: > /usr/lib/python3.13/importlib/__init__.py:88: in import_module > return _bootstrap._gcd_import(name[level:], package, level) > tests/test_biomaj.py:8: in <module> > from biomaj_core.config import BiomajConfig > biomaj_core/config.py:10: in <module> > from biomaj_core.bmajindex import BmajIndex > biomaj_core/bmajindex.py:5: in <module> > from elasticsearch import Elasticsearch > /usr/lib/python3/dist-packages/elasticsearch/__init__.py:32: in <module> > raise ImportError( > E ImportError: An incompatible version of elastic-transport is installed. > Must be between v8.0.0 and v9.0.0. Install the correct version with the > following command: $ python -m pip install 'elastic-transport>=8, <9' > =============================== warnings summary > =============================== > biomaj_core/utils.py:11 > > /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.13_biomaj-core/build/biomaj_core/utils.py:11: > DeprecationWarning: pkg_resources is deprecated as an API. See > https://setuptools.pypa.io/en/latest/pkg_resources.html > import pkg_resources > > -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html > =========================== short test summary info > ============================ > ERROR tests/test_biomaj.py > !!!!!!!!!!!!!!!!!!!! Interrupted: 1 error during collection > !!!!!!!!!!!!!!!!!!!! > ========================= 1 warning, 1 error in 0.29s > ========================== > E: pybuild pybuild:389: test: plugin distutils failed with: exit code=2: cd > /build/reproducible-path/biomaj3-core-3.0.28/.pybuild/cpython3_3.13_biomaj-core/build; > python3.13 -m pytest tests > dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.13 > returned exit code 13
