Your message dated Sat, 17 May 2025 18:07:48 +0000
with message-id <e1uglwq-00crte...@fasolo.debian.org>
and subject line Bug#1090279: fixed in python-loompy 3.0.7+dfsg-4
has caused the Debian Bug report #1090279,
regarding python-loompy: FTBFS: E ImportError: cannot import name '_typeconv'
from 'numba.core.typeconv'
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
1090279: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1090279
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:python-loompy
Version: 3.0.7+dfsg-3
Severity: serious
Tags: ftbfs
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build:
--------------------------------------------------------------------------------
[...]
debian/rules binary
dh binary --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
pybuild --configure -i python{version} -p "3.13 3.12"
I: pybuild base:311: python3.13 setup.py config
running config
I: pybuild base:311: python3.12 setup.py config
running config
dh_auto_build -O--buildsystem=pybuild
pybuild --build -i python{version} -p "3.13 3.12"
I: pybuild base:311: /usr/bin/python3.13 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
copying loompy/metadata_loaders.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
copying loompy/loom_validator.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
copying loompy/to_html.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
copying loompy/commands.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
copying loompy/bus_file.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
copying loompy/utils.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
copying loompy/_version.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
copying loompy/view_manager.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
copying loompy/loom_view.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
copying loompy/graph_manager.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
copying loompy/__init__.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
copying loompy/attribute_manager.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
copying loompy/normalize.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
copying loompy/global_attribute_manager.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
copying loompy/loompy.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
copying loompy/cell_calling.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
copying loompy/layer_manager.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
copying loompy/loom_layer.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy
I: pybuild base:311: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_loompy/build/loompy
copying loompy/metadata_loaders.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_loompy/build/loompy
copying loompy/loom_validator.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_loompy/build/loompy
copying loompy/to_html.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_loompy/build/loompy
copying loompy/commands.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_loompy/build/loompy
copying loompy/bus_file.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_loompy/build/loompy
copying loompy/utils.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_loompy/build/loompy
copying loompy/_version.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_loompy/build/loompy
copying loompy/view_manager.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_loompy/build/loompy
copying loompy/loom_view.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_loompy/build/loompy
copying loompy/graph_manager.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_loompy/build/loompy
copying loompy/__init__.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_loompy/build/loompy
copying loompy/attribute_manager.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_loompy/build/loompy
copying loompy/normalize.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_loompy/build/loompy
copying loompy/global_attribute_manager.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_loompy/build/loompy
copying loompy/loompy.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_loompy/build/loompy
copying loompy/cell_calling.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_loompy/build/loompy
copying loompy/layer_manager.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_loompy/build/loompy
copying loompy/loom_layer.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_loompy/build/loompy
dh_auto_test -O--buildsystem=pybuild
pybuild --test --test-pytest -i python{version} -p "3.13 3.12"
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build;
python3.13 -m pytest tests
============================= test session starts ==============================
platform linux -- Python 3.13.1, pytest-8.3.4, pluggy-1.5.0
rootdir: /<<PKGBUILDDIR>>
plugins: typeguard-4.4.1
collected 0 items / 5 errors
==================================== ERRORS ====================================
_ ERROR collecting
.pybuild/cpython3_3.13_loompy/build/tests/test_attribute_manager.py _
ImportError while importing test module
'/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/tests/test_attribute_manager.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3/dist-packages/numba/core/typeconv/typeconv.py:4: in <module>
from numba.core.typeconv import _typeconv
E ImportError: cannot import name '_typeconv' from 'numba.core.typeconv'
(/usr/lib/python3/dist-packages/numba/core/typeconv/__init__.py)
During handling of the above exception, another exception occurred:
/usr/lib/python3.13/importlib/__init__.py:88: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
tests/test_attribute_manager.py:3: in <module>
from loompy import AttributeManager
loompy/__init__.py:14: in <module>
from .bus_file import create_from_fastq
loompy/bus_file.py:14: in <module>
from numba import jit
/usr/lib/python3/dist-packages/numba/__init__.py:74: in <module>
from numba.misc.special import (
/usr/lib/python3/dist-packages/numba/misc/special.py:3: in <module>
from numba.core.typing.typeof import typeof
/usr/lib/python3/dist-packages/numba/core/typing/__init__.py:1: in <module>
from .context import BaseContext, Context
/usr/lib/python3/dist-packages/numba/core/typing/context.py:11: in <module>
from numba.core.typeconv import Conversion, rules
/usr/lib/python3/dist-packages/numba/core/typeconv/rules.py:2: in <module>
from .typeconv import TypeManager, TypeCastingRules
/usr/lib/python3/dist-packages/numba/core/typeconv/typeconv.py:16: in <module>
raise ImportError(msg)
E ImportError: Numba could not be imported.
E
--------------------------------------------------------------------------------
E If you are seeing this message and are undertaking Numba development work,
you may need to rebuild Numba.
E Please see the development set up guide:
E
E https://numba.readthedocs.io/en/stable/developer/contributing.html.
E
E
--------------------------------------------------------------------------------
E If you are not working on Numba development, the original error was:
'cannot import name '_typeconv' from 'numba.core.typeconv'
(/usr/lib/python3/dist-packages/numba/core/typeconv/__init__.py)'.
E For help, please visit:
E
E
https://numba.readthedocs.io/en/stable/user/faq.html#numba-could-not-be-imported
_ ERROR collecting .pybuild/cpython3_3.13_loompy/build/tests/test_connection.py
_
ImportError while importing test module
'/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/tests/test_connection.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3/dist-packages/numba/core/typeconv/typeconv.py:4: in <module>
from numba.core.typeconv import _typeconv
E ImportError: cannot import name '_typeconv' from 'numba.core.typeconv'
(/usr/lib/python3/dist-packages/numba/core/typeconv/__init__.py)
During handling of the above exception, another exception occurred:
/usr/lib/python3.13/importlib/__init__.py:88: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
tests/test_connection.py:6: in <module>
import loompy
loompy/__init__.py:14: in <module>
from .bus_file import create_from_fastq
loompy/bus_file.py:14: in <module>
from numba import jit
/usr/lib/python3/dist-packages/numba/__init__.py:74: in <module>
from numba.misc.special import (
/usr/lib/python3/dist-packages/numba/misc/special.py:3: in <module>
from numba.core.typing.typeof import typeof
/usr/lib/python3/dist-packages/numba/core/typing/__init__.py:1: in <module>
from .context import BaseContext, Context
/usr/lib/python3/dist-packages/numba/core/typing/context.py:11: in <module>
from numba.core.typeconv import Conversion, rules
/usr/lib/python3/dist-packages/numba/core/typeconv/rules.py:2: in <module>
from .typeconv import TypeManager, TypeCastingRules
/usr/lib/python3/dist-packages/numba/core/typeconv/typeconv.py:16: in <module>
raise ImportError(msg)
E ImportError: Numba could not be imported.
E
--------------------------------------------------------------------------------
E If you are seeing this message and are undertaking Numba development work,
you may need to rebuild Numba.
E Please see the development set up guide:
E
E https://numba.readthedocs.io/en/stable/developer/contributing.html.
E
E
--------------------------------------------------------------------------------
E If you are not working on Numba development, the original error was:
'cannot import name '_typeconv' from 'numba.core.typeconv'
(/usr/lib/python3/dist-packages/numba/core/typeconv/__init__.py)'.
E For help, please visit:
E
E
https://numba.readthedocs.io/en/stable/user/faq.html#numba-could-not-be-imported
_ ERROR collecting
.pybuild/cpython3_3.13_loompy/build/tests/test_file_attribute_manager.py _
ImportError while importing test module
'/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/tests/test_file_attribute_manager.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3/dist-packages/numba/core/typeconv/typeconv.py:4: in <module>
from numba.core.typeconv import _typeconv
E ImportError: cannot import name '_typeconv' from 'numba.core.typeconv'
(/usr/lib/python3/dist-packages/numba/core/typeconv/__init__.py)
During handling of the above exception, another exception occurred:
/usr/lib/python3.13/importlib/__init__.py:88: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
tests/test_file_attribute_manager.py:8: in <module>
from loompy import GlobalAttributeManager
loompy/__init__.py:14: in <module>
from .bus_file import create_from_fastq
loompy/bus_file.py:14: in <module>
from numba import jit
/usr/lib/python3/dist-packages/numba/__init__.py:74: in <module>
from numba.misc.special import (
/usr/lib/python3/dist-packages/numba/misc/special.py:3: in <module>
from numba.core.typing.typeof import typeof
/usr/lib/python3/dist-packages/numba/core/typing/__init__.py:1: in <module>
from .context import BaseContext, Context
/usr/lib/python3/dist-packages/numba/core/typing/context.py:11: in <module>
from numba.core.typeconv import Conversion, rules
/usr/lib/python3/dist-packages/numba/core/typeconv/rules.py:2: in <module>
from .typeconv import TypeManager, TypeCastingRules
/usr/lib/python3/dist-packages/numba/core/typeconv/typeconv.py:16: in <module>
raise ImportError(msg)
E ImportError: Numba could not be imported.
E
--------------------------------------------------------------------------------
E If you are seeing this message and are undertaking Numba development work,
you may need to rebuild Numba.
E Please see the development set up guide:
E
E https://numba.readthedocs.io/en/stable/developer/contributing.html.
E
E
--------------------------------------------------------------------------------
E If you are not working on Numba development, the original error was:
'cannot import name '_typeconv' from 'numba.core.typeconv'
(/usr/lib/python3/dist-packages/numba/core/typeconv/__init__.py)'.
E For help, please visit:
E
E
https://numba.readthedocs.io/en/stable/user/faq.html#numba-could-not-be-imported
___ ERROR collecting .pybuild/cpython3_3.13_loompy/build/tests/test_main.py ____
ImportError while importing test module
'/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/tests/test_main.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3/dist-packages/numba/core/typeconv/typeconv.py:4: in <module>
from numba.core.typeconv import _typeconv
E ImportError: cannot import name '_typeconv' from 'numba.core.typeconv'
(/usr/lib/python3/dist-packages/numba/core/typeconv/__init__.py)
During handling of the above exception, another exception occurred:
/usr/lib/python3.13/importlib/__init__.py:88: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
tests/test_main.py:1: in <module>
import loompy
loompy/__init__.py:14: in <module>
from .bus_file import create_from_fastq
loompy/bus_file.py:14: in <module>
from numba import jit
/usr/lib/python3/dist-packages/numba/__init__.py:74: in <module>
from numba.misc.special import (
/usr/lib/python3/dist-packages/numba/misc/special.py:3: in <module>
from numba.core.typing.typeof import typeof
/usr/lib/python3/dist-packages/numba/core/typing/__init__.py:1: in <module>
from .context import BaseContext, Context
/usr/lib/python3/dist-packages/numba/core/typing/context.py:11: in <module>
from numba.core.typeconv import Conversion, rules
/usr/lib/python3/dist-packages/numba/core/typeconv/rules.py:2: in <module>
from .typeconv import TypeManager, TypeCastingRules
/usr/lib/python3/dist-packages/numba/core/typeconv/typeconv.py:16: in <module>
raise ImportError(msg)
E ImportError: Numba could not be imported.
E
--------------------------------------------------------------------------------
E If you are seeing this message and are undertaking Numba development work,
you may need to rebuild Numba.
E Please see the development set up guide:
E
E https://numba.readthedocs.io/en/stable/developer/contributing.html.
E
E
--------------------------------------------------------------------------------
E If you are not working on Numba development, the original error was:
'cannot import name '_typeconv' from 'numba.core.typeconv'
(/usr/lib/python3/dist-packages/numba/core/typeconv/__init__.py)'.
E For help, please visit:
E
E
https://numba.readthedocs.io/en/stable/user/faq.html#numba-could-not-be-imported
_ ERROR collecting .pybuild/cpython3_3.13_loompy/build/tests/test_validator.py _
ImportError while importing test module
'/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/tests/test_validator.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3/dist-packages/numba/core/typeconv/typeconv.py:4: in <module>
from numba.core.typeconv import _typeconv
E ImportError: cannot import name '_typeconv' from 'numba.core.typeconv'
(/usr/lib/python3/dist-packages/numba/core/typeconv/__init__.py)
During handling of the above exception, another exception occurred:
/usr/lib/python3.13/importlib/__init__.py:88: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
tests/test_validator.py:6: in <module>
import loompy
loompy/__init__.py:14: in <module>
from .bus_file import create_from_fastq
loompy/bus_file.py:14: in <module>
from numba import jit
/usr/lib/python3/dist-packages/numba/__init__.py:74: in <module>
from numba.misc.special import (
/usr/lib/python3/dist-packages/numba/misc/special.py:3: in <module>
from numba.core.typing.typeof import typeof
/usr/lib/python3/dist-packages/numba/core/typing/__init__.py:1: in <module>
from .context import BaseContext, Context
/usr/lib/python3/dist-packages/numba/core/typing/context.py:11: in <module>
from numba.core.typeconv import Conversion, rules
/usr/lib/python3/dist-packages/numba/core/typeconv/rules.py:2: in <module>
from .typeconv import TypeManager, TypeCastingRules
/usr/lib/python3/dist-packages/numba/core/typeconv/typeconv.py:16: in <module>
raise ImportError(msg)
E ImportError: Numba could not be imported.
E
--------------------------------------------------------------------------------
E If you are seeing this message and are undertaking Numba development work,
you may need to rebuild Numba.
E Please see the development set up guide:
E
E https://numba.readthedocs.io/en/stable/developer/contributing.html.
E
E
--------------------------------------------------------------------------------
E If you are not working on Numba development, the original error was:
'cannot import name '_typeconv' from 'numba.core.typeconv'
(/usr/lib/python3/dist-packages/numba/core/typeconv/__init__.py)'.
E For help, please visit:
E
E
https://numba.readthedocs.io/en/stable/user/faq.html#numba-could-not-be-imported
=============================== warnings summary ===============================
loompy/view_manager.py:23
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build/loompy/view_manager.py:23:
SyntaxWarning: "is not" with 'int' literal. Did you mean "!="?
if type(slice_) is not tuple or len(slice_) is not 2:
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
=========================== short test summary info ============================
ERROR tests/test_attribute_manager.py
ERROR tests/test_connection.py
ERROR tests/test_file_attribute_manager.py
ERROR tests/test_main.py
ERROR tests/test_validator.py
!!!!!!!!!!!!!!!!!!! Interrupted: 5 errors during collection !!!!!!!!!!!!!!!!!!!!
========================= 1 warning, 5 errors in 0.54s =========================
E: pybuild pybuild:389: test: plugin distutils failed with: exit code=2: cd
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_loompy/build; python3.13 -m pytest tests
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_loompy/build;
python3.12 -m pytest tests
============================= test session starts ==============================
platform linux -- Python 3.12.8, pytest-8.3.4, pluggy-1.5.0
rootdir: /<<PKGBUILDDIR>>
plugins: typeguard-4.4.1
collected 7 items
tests/test_attribute_manager.py .. [ 28%]
tests/test_connection.py . [ 42%]
tests/test_file_attribute_manager.py . [ 57%]
tests/test_main.py .. [ 85%]
tests/test_validator.py . [100%]
=============================== warnings summary ===============================
loompy/view_manager.py:23
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_loompy/build/loompy/view_manager.py:23:
SyntaxWarning: "is not" with 'int' literal. Did you mean "!="?
if type(slice_) is not tuple or len(slice_) is not 2:
.pybuild/cpython3_3.12_loompy/build/tests/test_connection.py: 7 warnings
.pybuild/cpython3_3.12_loompy/build/tests/test_main.py: 22 warnings
.pybuild/cpython3_3.12_loompy/build/tests/test_validator.py: 1 warning
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_loompy/build/loompy/utils.py:15:
DeprecationWarning: datetime.datetime.utcnow() is deprecated and scheduled for
removal in a future version. Use timezone-aware objects to represent datetimes
in UTC: datetime.datetime.now(datetime.UTC).
return datetime.datetime.utcnow().strftime("%Y%m%dT%H%M%S.%fZ")
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
======================== 7 passed, 31 warnings in 1.22s ========================
rm -fr -- /tmp/dh-xdg-rundir-s4vhLEBH
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.13
3.12" returned exit code 13
make: *** [debian/rules:7: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202412/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and affects, so that this is still visible in the BTS web
page for this package.
Thanks.
--- End Message ---
--- Begin Message ---
Source: python-loompy
Source-Version: 3.0.7+dfsg-4
Done: Alexandre Detiste <tc...@debian.org>
We believe that the bug you reported is fixed in the latest version of
python-loompy, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1090...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Alexandre Detiste <tc...@debian.org> (supplier of updated python-loompy package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sat, 17 May 2025 19:22:52 +0200
Source: python-loompy
Architecture: source
Version: 3.0.7+dfsg-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Alexandre Detiste <tc...@debian.org>
Closes: 1083659 1085932 1090279
Changes:
python-loompy (3.0.7+dfsg-4) unstable; urgency=medium
.
* Team upload.
* It builds now (Closes: #1090279)
* Do not generate a dependency on python3-pkg-resources (Closes: #1083659)
* Add Numpy 2.x patch
.
[ Andreas Tille ]
* Standards-Version: 4.7.0 (routine-update)
* Fix syntax error with Python3.12 (Closes: #1085932).
* Simplify broken Salsa CI configuration
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