Your message dated Sat, 10 May 2025 13:53:23 +0200
with message-id
<CADsTwjKt=fxx1eu77tdrberftqt2fo2zrejuqh0unp4zcet...@mail.gmail.com>
and subject line Re: xraylarch: FTBFS in testing: intersphinx inventory '
has caused the Debian Bug report #1102964,
regarding xraylarch: FTBFS in testing: intersphinx inventory
'/usr/share/doc/python-numpy-doc/html/objects.inv' not fetchable due to <class
'FileNotFoundError'>: [Errno 2] No such file or directory:
'/usr/share/doc/python-numpy-doc/html/objects.inv'
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
1102964: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1102964
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: xraylarch
Version: 0.9.81+ds1-2
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lu...@debian.org
Usertags: ftbfs-20250412 ftbfs-trixie
Hi,
During a rebuild of all packages in testing (trixie), your package failed
to build on amd64.
Relevant part (hopefully):
> make[2]: Entering directory
> '/build/reproducible-path/xraylarch-0.9.81+ds1/doc'
> cp sphinx/ext_mathjax.py extensions.py
> sphinx-build -b html -d _build/doctrees . _build/html
> Running Sphinx v8.1.3
> mkdir -p failed for path /sbuild-nonexistent/.config/matplotlib: [Errno 13]
> Permission denied: '/sbuild-nonexistent'
> Matplotlib created a temporary cache directory at /tmp/matplotlib-j9st2eao
> because there was an issue with the default path
> (/sbuild-nonexistent/.config/matplotlib); it is highly recommended to set the
> MPLCONFIGDIR environment variable to a writable directory, in particular to
> speed up the import of Matplotlib and to better support multiprocessing.
> loading translations [en]... done
> making output directory... done
> Converting `source_suffix = '.rst'` to `source_suffix = {'.rst':
> 'restructuredtext'}`.
> checking bibtex cache... out of date
> parsing bibtex file
> /build/reproducible-path/xraylarch-0.9.81+ds1/doc/larch.bib... parsed 77
> entries
> loading intersphinx inventory 'py' from
> /usr/share/doc/python3-doc/html/objects.inv ...
> loading intersphinx inventory 'numpy' from
> /usr/share/doc/python-numpy-doc/html/objects.inv ...
> loading intersphinx inventory 'scipy' from
> /usr/share/doc/python-scipy-doc/html/objects.inv ...
> WARNING: failed to reach any of the inventories with the following issues:
> intersphinx inventory '/usr/share/doc/python-numpy-doc/html/objects.inv' not
> fetchable due to <class 'FileNotFoundError'>: [Errno 2] No such file or
> directory: '/usr/share/doc/python-numpy-doc/html/objects.inv'
> building [mo]: targets for 0 po files that are out of date
> writing output...
> building [html]: targets for 52 source files that are out of date
> updating environment: [new config] 52 added, 0 changed, 0 removed
> reading sources... [ 2%] _config
> reading sources... [ 4%] bibliography
> reading sources... [ 6%] data
> reading sources... [ 8%] fitting
> reading sources... [ 10%] fitting_confidence
> reading sources... [ 12%] fitting_examples
> reading sources... [ 13%] fitting_fitpeaks
> reading sources... [ 15%] fitting_lineshapes
> reading sources... [ 17%] fitting_minimize
> reading sources... [ 19%] fitting_overview
> reading sources... [ 21%] fitting_parameters
> reading sources... [ 23%] fitting_results
> reading sources... [ 25%] getting_started
> reading sources... [ 27%] guis
> reading sources... [ 29%] index
> reading sources... [ 31%] installation
> reading sources... [ 33%] larchlang
> reading sources... [ 35%] larchlang/arrays
> reading sources... [ 37%] larchlang/builtins
> reading sources... [ 38%] larchlang/datatypes
> reading sources... [ 40%] larchlang/errors
> reading sources... [ 42%] larchlang/flow
> reading sources... [ 44%] larchlang/modules
> reading sources... [ 46%] larchlang/notpython
> reading sources... [ 48%] larchlang/procedures
> reading sources... [ 50%] larchlang/start
> reading sources... [ 52%] larix
> reading sources... [ 54%] larix/dialogs
> reading sources... [ 56%] larix/iodata
> reading sources... [ 58%] larix/overview
> reading sources... [ 60%] larix/preedge
> reading sources... [ 62%] overview
> reading sources... [ 63%] plotting
> reading sources... [ 65%] python
> reading sources... [ 67%] qtrixs
> reading sources... [ 69%] wxmap_viewer
> reading sources... [ 71%] xafs
> reading sources... [ 73%] xafs_autobk
> reading sources... [ 75%] xafs_diffkk
> reading sources... [ 77%] xafs_feffit
> reading sources... [ 79%] xafs_feffpaths
> reading sources... [ 81%] xafs_fourier
> reading sources... [ 83%] xafs_preedge
> reading sources... [ 85%] xafs_utilities
> reading sources... [ 87%] xafs_wavelets
> reading sources... [ 88%] xafs_xanes
> reading sources... [ 90%] xray
> reading sources... [ 92%] xrd1d_viewer
> reading sources... [ 94%] xrf
> reading sources... [ 96%] xrf_mca
> reading sources... [ 98%] xrf_modelling
> reading sources... [100%] xrf_viewer
>
> looking for now-outdated files... none found
> pickling environment... done
> checking consistency... done
> preparing documents... done
> copying assets...
> copying static files...
> Writing evaluated template result to
> /build/reproducible-path/xraylarch-0.9.81+ds1/doc/_build/html/_static/language_data.js
> Writing evaluated template result to
> /build/reproducible-path/xraylarch-0.9.81+ds1/doc/_build/html/_static/documentation_options.js
> Writing evaluated template result to
> /build/reproducible-path/xraylarch-0.9.81+ds1/doc/_build/html/_static/basic.css
> Writing evaluated template result to
> /build/reproducible-path/xraylarch-0.9.81+ds1/doc/_build/html/_static/nature.css
> Writing evaluated template result to
> /build/reproducible-path/xraylarch-0.9.81+ds1/doc/_build/html/_static/basic.css
> Writing evaluated template result to
> /build/reproducible-path/xraylarch-0.9.81+ds1/doc/_build/html/_static/default.css
> Writing evaluated template result to
> /build/reproducible-path/xraylarch-0.9.81+ds1/doc/_build/html/_static/larchdoc.css
> copying static files: done
> copying extra files...
> copying extra files: done
> copying assets: done
> writing output... [ 2%] _config
> writing output... [ 4%] bibliography
> writing output... [ 6%] data
> writing output... [ 8%] fitting
> writing output... [ 10%] fitting_confidence
> writing output... [ 12%] fitting_examples
> writing output... [ 13%] fitting_fitpeaks
> writing output... [ 15%] fitting_lineshapes
> writing output... [ 17%] fitting_minimize
> writing output... [ 19%] fitting_overview
> writing output... [ 21%] fitting_parameters
> writing output... [ 23%] fitting_results
> writing output... [ 25%] getting_started
> writing output... [ 27%] guis
> writing output... [ 29%] index
> writing output... [ 31%] installation
> writing output... [ 33%] larchlang
> writing output... [ 35%] larchlang/arrays
> writing output... [ 37%] larchlang/builtins
> writing output... [ 38%] larchlang/datatypes
> writing output... [ 40%] larchlang/errors
> writing output... [ 42%] larchlang/flow
> writing output... [ 44%] larchlang/modules
> writing output... [ 46%] larchlang/notpython
> writing output... [ 48%] larchlang/procedures
> writing output... [ 50%] larchlang/start
> writing output... [ 52%] larix
> writing output... [ 54%] larix/dialogs
> writing output... [ 56%] larix/iodata
> writing output... [ 58%] larix/overview
> writing output... [ 60%] larix/preedge
> writing output... [ 62%] overview
> writing output... [ 63%] plotting
> writing output... [ 65%] python
> writing output... [ 67%] qtrixs
> writing output... [ 69%] wxmap_viewer
> writing output... [ 71%] xafs
> writing output... [ 73%] xafs_autobk
> writing output... [ 75%] xafs_diffkk
> writing output... [ 77%] xafs_feffit
> writing output... [ 79%] xafs_feffpaths
> writing output... [ 81%] xafs_fourier
> writing output... [ 83%] xafs_preedge
> writing output... [ 85%] xafs_utilities
> writing output... [ 87%] xafs_wavelets
> writing output... [ 88%] xafs_xanes
> writing output... [ 90%] xray
> writing output... [ 92%] xrd1d_viewer
> writing output... [ 94%] xrf
> writing output... [ 96%] xrf_mca
> writing output... [ 98%] xrf_modelling
> writing output... [100%] xrf_viewer
>
> generating indices... genindex done
> writing additional pages... search done
> copying images... [ 1%] _images/fit_example_conf2.png
> copying images... [ 2%] _images/fit_example_conf3a.png
> copying images... [ 2%] _images/fit_example_conf3b.png
> copying images... [ 3%] _images/fit_example_conf4a.png
> copying images... [ 4%] _images/fit_example_conf4b.png
> copying images... [ 5%] _images/fit_example1.png
> copying images... [ 5%] _images/fit_example2a1.png
> copying images... [ 6%] _images/fit_example2a2.png
> copying images... [ 7%] _images/fit_example2b1.png
> copying images... [ 8%] _images/fit_example2b2.png
> copying images... [ 8%] _images/fit_example2c1.png
> copying images... [ 9%] _images/fit_example2c2.png
> copying images... [ 10%] _images/fit_example3a.png
> copying images... [ 11%] _images/fit_example3b.png
> copying images... [ 11%] _images/fit_example3c1.png
> copying images... [ 12%] _images/fit_example3c2.png
> copying images... [ 13%] _images/fit_example3d1.png
> copying images... [ 14%] _images/fit_example3d2.png
> copying images... [ 14%] _images/fit_example3e1.png
> copying images... [ 15%] _images/fit_example3e2.png
> copying images... [ 16%] _images/fit_peakfit1.png
> copying images... [ 17%] _images/fit_peakfit2.png
> copying images... [ 17%] _images/LarchGUI.png
> copying images... [ 18%] _images/Larch_LinePlot.png
> copying images... [ 19%] _images/Larch_LinePlot_Config.png
> copying images... [ 20%] _images/pin_icon.png
> copying images... [ 20%] _images/Larix_calibrate_dialog.png
> copying images... [ 21%] _images/Larix_deglitch_dialog.png
> copying images... [ 22%] _images/Larix_smooth_dialog.png
> copying images... [ 23%] _images/Larix_deconvolve_dialog.png
> copying images... [ 23%] _images/Larix_rebin_dialog.png
> copying images... [ 24%] _images/Larix_overabsorption_dialog.png
> copying images... [ 25%] _images/Larix_TextFileImport.png
> copying images... [ 26%] _images/Larix_AthenaImporter.png
> copying images... [ 26%] _images/Larix_H5SpecImporter.png
> copying images... [ 27%] _images/Larix_SessionImport.png
> copying images... [ 28%] _images/Larix_Main.png
> copying images... [ 29%] _images/Larix_prepeaks_baseline_form.png
> copying images... [ 29%] _images/Larix_prepeaks_baseline_plot.png
> copying images... [ 30%] _images/Larix_prepeaks_1gaussian_form.png
> copying images... [ 31%] _images/Larix_prepeaks_1gaussian_plot.png
> copying images... [ 32%] _images/Larix_prepeaks_fitresult1_form.png
> copying images... [ 32%] _images/Larix_prepeaks_fitresult1_plot.png
> copying images... [ 33%] _images/Larix_prepeaks_fitresult1_residual_plot.png
> copying images... [ 34%] _images/Larix_prepeaks_fitresult2_form.png
> copying images... [ 35%] _images/Larix_prepeaks_fitresult2_plot.png
> copying images... [ 35%] _images/Larix_prepeaks_fitresult3_plot.png
> copying images... [ 36%] _images/Larix_prepeaks_fitresult4_plot.png
> copying images... [ 37%] _images/Larix_LCF_main.png
> copying images... [ 38%] _images/Larix_LCF_plot.png
> copying images... [ 38%] _images/Larix_LCF_results.png
> copying images... [ 39%] _images/Larix_PCAmain_page.png
> copying images... [ 40%] _images/Larix_PCA_compplot.png
> copying images... [ 41%] _images/Larix_PCA_screeplot.png
> copying images... [ 41%] _images/Larix_PCA_targetplot.png
> copying images... [ 42%] _images/plot_basic1.png
> copying images... [ 43%] _images/plot_basic2.png
> copying images... [ 44%] _images/plot_config.png
> copying images... [ 44%] _images/plot_image1.png
> copying images... [ 45%] _images/plot_contour1.png
> copying images... [ 46%] _images/plot_histogram.png
> copying images... [ 47%] _images/qtrixs_main_window.png
> copying images... [ 47%] _images/qtrixs_cursors.png
> copying images... [ 48%] _images/qtrixs_profiles.png
> copying images... [ 49%] _images/Mapviewer_1ROI.png
> copying images... [ 50%] _images/MapviewerImage_1ROI.png
> copying images... [ 50%] _images/XRFDisplay.png
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> copying images... [ 53%] _images/Mapviewer_XRD_Display.png
> copying images... [ 53%] _images/xafs_autobk1a.png
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> copying images... [ 57%] _images/diffkk_cu.png
> copying images... [ 58%] _images/diffkk_ceo2_xafs.png
> copying images... [ 59%] _images/diffkk_ceo2_notok.png
> copying images... [ 59%] _images/diffkk_ceo2_ok.png
> copying images... [ 60%] _images/feffit_example1.png
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>
> dumping search index in English (code: en)... done
> dumping object inventory... done
> build succeeded, 1 warning.
>
> The HTML pages are in _build/html.
> make[2]: Leaving directory '/build/reproducible-path/xraylarch-0.9.81+ds1/doc'
> make[1]: Leaving directory '/build/reproducible-path/xraylarch-0.9.81+ds1'
> dh_auto_test -O--buildsystem=pybuild
> pybuild --test --test-pytest -i python{version} -p 3.13
> I: pybuild base:311: cd
> /build/reproducible-path/xraylarch-0.9.81+ds1/.pybuild/cpython3_3.13_xraylarch/build;
> python3.13 -m pytest tests
> ============================= test session starts
> ==============================
> platform linux -- Python 3.13.2, pytest-8.3.5, pluggy-1.5.0
> rootdir: /build/reproducible-path/xraylarch-0.9.81+ds1
> configfile: setup.cfg
> plugins: typeguard-4.4.2, cov-5.0.0, anyio-4.8.0
> collected 166 items / 1 error
>
> ==================================== ERRORS
> ====================================
> _ ERROR collecting
> .pybuild/cpython3_3.13_xraylarch/build/tests/test_symbol_callbacks.py _
> tests/test_symbol_callbacks.py:2: in <module>
> linp = Interpreter()
> larch/interpreter.py:126: in __init__
> from larch import builtins
> larch/builtins.py:29: in <module>
> from . import epics
> larch/epics/__init__.py:70: in <module>
> from .xrfcontrol import EpicsXRFApp
> larch/epics/xrfcontrol.py:13: in <module>
> import wx
> /usr/lib/python3/dist-packages/wx/__init__.py:12: in <module>
> __version__ = wx.__version__.VERSION_STRING
> E AttributeError: partially initialized module 'wx' from
> '/usr/lib/python3/dist-packages/wx/__init__.py' has no attribute
> '__version__' (most likely due to a circular import)
>
> ---------- coverage: platform linux, python 3.13.2-final-0 -----------
> Coverage HTML written to dir htmlcov
>
> =========================== short test summary info
> ============================
> ERROR tests/test_symbol_callbacks.py - AttributeError: partially initialized
> ...
> !!!!!!!!!!!!!!!!!!!! Interrupted: 1 error during collection
> !!!!!!!!!!!!!!!!!!!!
> ============================== 1 error in 18.80s
> ===============================
> E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=2: cd
> /build/reproducible-path/xraylarch-0.9.81+ds1/.pybuild/cpython3_3.13_xraylarch/build;
> python3.13 -m pytest tests
> rm -fr -- /tmp/dh-xdg-rundir-QcbfMhOz
> dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.13
> returned exit code 13
The full build log is available from:
http://qa-logs.debian.net/2025/04/12/xraylarch_0.9.81+ds1-2_testing.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20250412;users=lu...@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20250412&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Transitional wx-induced FTBFS can no longer be reproduced.
--- End Message ---