Your message dated Sun, 04 May 2025 15:49:52 +0000
with message-id <e1ubbbe-00gtzm...@fasolo.debian.org>
and subject line Bug#1103129: fixed in libbiosoup-dev 0.11.0-3
has caused the Debian Bug report #1103129,
regarding libbiosoup-dev: Installs arch dependent cmake files
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
1103129: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1103129
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: libbioparser-dev
Version: 3.1.0-1
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lu...@debian.org
Usertags: ftbfs-20250414 ftbfs-trixie
Hi,
During a rebuild of all packages in testing (trixie), your package failed
to build on i386.
Relevant part (hopefully):
> make[1]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0'
> dh_auto_configure -- -Dbioparser_build_tests=ON
> cd obj-i686-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb
> PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr
> -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc
> -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON
> -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF
> -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON
> -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run
> -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles"
> -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu
> -Dbioparser_build_tests=ON ..
> -- The CXX compiler identification is GNU 14.2.0
> -- Detecting CXX compiler ABI info
> -- Detecting CXX compiler ABI info - done
> -- Check for working CXX compiler: /usr/bin/c++ - skipped
> -- Detecting CXX compile features
> -- Detecting CXX compile features - done
> -- Found ZLIB: /usr/lib/i386-linux-gnu/libz.so (found suitable version
> "1.3.1", minimum required is "1.2.8")
> CMake Warning (dev) at /usr/share/cmake-3.31/Modules/FetchContent.cmake:1953
> (message):
> Calling FetchContent_Populate(biosoup) is deprecated, call
> FetchContent_MakeAvailable(biosoup) instead. Policy CMP0169 can be set to
> OLD to allow FetchContent_Populate(biosoup) to be called directly for now,
> but the ability to call it with declared details will be removed completely
> in a future version.
> Call Stack (most recent call first):
> CMakeLists.txt:38 (FetchContent_Populate)
> This warning is for project developers. Use -Wno-dev to suppress it.
>
> CMake Warning at /usr/share/cmake-3.31/Modules/FetchContent.cmake:2111
> (message):
> FETCHCONTENT_FULLY_DISCONNECTED is set to true, which requires the source
> directory for dependency biosoup to already be populated. This generally
> means it must not be set to true the first time CMake is run in a build
> directory. The following source directory should already be populated, but
> it doesn't exist:
>
>
> /build/reproducible-path/libbioparser-dev-3.1.0/obj-i686-linux-gnu/_deps/biosoup-src
>
> Policy CMP0170 controls enforcement of this requirement.
> Call Stack (most recent call first):
> /usr/share/cmake-3.31/Modules/FetchContent.cmake:1978:EVAL:1
> (__FetchContent_Populate)
> /usr/share/cmake-3.31/Modules/FetchContent.cmake:1978 (cmake_language)
> CMakeLists.txt:38 (FetchContent_Populate)
>
>
> CMake Error at CMakeLists.txt:39 (add_subdirectory):
> add_subdirectory given source
>
> "/build/reproducible-path/libbioparser-dev-3.1.0/obj-i686-linux-gnu/_deps/biosoup-src"
> which is not an existing directory.
>
>
> -- Configuring incomplete, errors occurred!
> cd obj-i686-linux-gnu && tail -v -n \+0 CMakeCache.txt
> ==> CMakeCache.txt <==
> # This is the CMakeCache file.
> # For build in directory:
> /build/reproducible-path/libbioparser-dev-3.1.0/obj-i686-linux-gnu
> # It was generated by CMake: /usr/bin/cmake
> # You can edit this file to change values found and used by cmake.
> # If you do not want to change any of the values, simply exit the editor.
> # If you do want to change a value, simply edit, save, and exit the editor.
> # The syntax for the file is as follows:
> # KEY:TYPE=VALUE
> # KEY is the name of a variable in the cache.
> # TYPE is a hint to GUIs for the type of VALUE, DO NOT EDIT TYPE!.
> # VALUE is the current value for the KEY.
>
> ########################
> # EXTERNAL cache entries
> ########################
>
> //Path to a program.
> CMAKE_ADDR2LINE:FILEPATH=/usr/bin/addr2line
>
> //Path to a program.
> CMAKE_AR:FILEPATH=/usr/bin/ar
>
> //Choose the type of build, options are: None Debug Release RelWithDebInfo
> // MinSizeRel ...
> CMAKE_BUILD_TYPE:STRING=None
>
> //Enable/Disable color output during build.
> CMAKE_COLOR_MAKEFILE:BOOL=ON
>
> //CXX compiler
> CMAKE_CXX_COMPILER:FILEPATH=/usr/bin/c++
>
> //A wrapper around 'ar' adding the appropriate '--plugin' option
> // for the GCC compiler
> CMAKE_CXX_COMPILER_AR:FILEPATH=/usr/bin/gcc-ar-14
>
> //A wrapper around 'ranlib' adding the appropriate '--plugin' option
> // for the GCC compiler
> CMAKE_CXX_COMPILER_RANLIB:FILEPATH=/usr/bin/gcc-ranlib-14
>
> //Flags used by the CXX compiler during all build types.
> CMAKE_CXX_FLAGS:STRING=-g -O2
> -ffile-prefix-map=/build/reproducible-path/libbioparser-dev-3.1.0=.
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2
>
> //Flags used by the CXX compiler during DEBUG builds.
> CMAKE_CXX_FLAGS_DEBUG:STRING=-g
>
> //Flags used by the CXX compiler during MINSIZEREL builds.
> CMAKE_CXX_FLAGS_MINSIZEREL:STRING=-Os -DNDEBUG
>
> //Flags used by the CXX compiler during NONE builds.
> CMAKE_CXX_FLAGS_NONE:STRING=
>
> //Flags used by the CXX compiler during RELEASE builds.
> CMAKE_CXX_FLAGS_RELEASE:STRING=-O3 -DNDEBUG
>
> //Flags used by the CXX compiler during RELWITHDEBINFO builds.
> CMAKE_CXX_FLAGS_RELWITHDEBINFO:STRING=-O2 -g -DNDEBUG
>
> //Path to a program.
> CMAKE_DLLTOOL:FILEPATH=CMAKE_DLLTOOL-NOTFOUND
>
> //Flags used by the linker during all build types.
> CMAKE_EXE_LINKER_FLAGS:STRING=-Wl,-z,relro
>
> //Flags used by the linker during DEBUG builds.
> CMAKE_EXE_LINKER_FLAGS_DEBUG:STRING=
>
> //Flags used by the linker during MINSIZEREL builds.
> CMAKE_EXE_LINKER_FLAGS_MINSIZEREL:STRING=
>
> //Flags used by the linker during NONE builds.
> CMAKE_EXE_LINKER_FLAGS_NONE:STRING=
>
> //Flags used by the linker during RELEASE builds.
> CMAKE_EXE_LINKER_FLAGS_RELEASE:STRING=
>
> //Flags used by the linker during RELWITHDEBINFO builds.
> CMAKE_EXE_LINKER_FLAGS_RELWITHDEBINFO:STRING=
>
> //Enable/Disable output of compile commands during generation.
> CMAKE_EXPORT_COMPILE_COMMANDS:BOOL=
>
> //No help, variable specified on the command line.
> CMAKE_EXPORT_NO_PACKAGE_REGISTRY:UNINITIALIZED=ON
>
> //No help, variable specified on the command line.
> CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY:UNINITIALIZED=ON
>
> //Value Computed by CMake.
> CMAKE_FIND_PACKAGE_REDIRECTS_DIR:STATIC=/build/reproducible-path/libbioparser-dev-3.1.0/obj-i686-linux-gnu/CMakeFiles/pkgRedirects
>
> //No help, variable specified on the command line.
> CMAKE_FIND_USE_PACKAGE_REGISTRY:UNINITIALIZED=OFF
>
> //User executables (bin)
> CMAKE_INSTALL_BINDIR:PATH=bin
>
> //Read-only architecture-independent data (DATAROOTDIR)
> CMAKE_INSTALL_DATADIR:PATH=
>
> //Read-only architecture-independent data root (share)
> CMAKE_INSTALL_DATAROOTDIR:PATH=share
>
> //Documentation root (DATAROOTDIR/doc/PROJECT_NAME)
> CMAKE_INSTALL_DOCDIR:PATH=
>
> //C header files (include)
> CMAKE_INSTALL_INCLUDEDIR:PATH=include
>
> //Info documentation (DATAROOTDIR/info)
> CMAKE_INSTALL_INFODIR:PATH=
>
> //Object code libraries (lib)
> CMAKE_INSTALL_LIBDIR:PATH=lib/i386-linux-gnu
>
> //Program executables (libexec)
> CMAKE_INSTALL_LIBEXECDIR:PATH=libexec
>
> //Locale-dependent data (DATAROOTDIR/locale)
> CMAKE_INSTALL_LOCALEDIR:PATH=
>
> //Modifiable single-machine data (var)
> CMAKE_INSTALL_LOCALSTATEDIR:PATH=/var
>
> //Man documentation (DATAROOTDIR/man)
> CMAKE_INSTALL_MANDIR:PATH=
>
> //C header files for non-gcc (/usr/include)
> CMAKE_INSTALL_OLDINCLUDEDIR:PATH=/usr/include
>
> //Install path prefix, prepended onto install directories.
> CMAKE_INSTALL_PREFIX:PATH=/usr
>
> //Run-time variable data (LOCALSTATEDIR/run)
> CMAKE_INSTALL_RUNSTATEDIR:PATH=/run
>
> //System admin executables (sbin)
> CMAKE_INSTALL_SBINDIR:PATH=sbin
>
> //Modifiable architecture-independent data (com)
> CMAKE_INSTALL_SHAREDSTATEDIR:PATH=com
>
> //Read-only single-machine data (etc)
> CMAKE_INSTALL_SYSCONFDIR:PATH=/etc
>
> //Path to a program.
> CMAKE_LINKER:FILEPATH=/usr/bin/ld
>
> //Path to a program.
> CMAKE_MAKE_PROGRAM:FILEPATH=/usr/bin/gmake
>
> //Flags used by the linker during the creation of modules during
> // all build types.
> CMAKE_MODULE_LINKER_FLAGS:STRING=-Wl,-z,relro
>
> //Flags used by the linker during the creation of modules during
> // DEBUG builds.
> CMAKE_MODULE_LINKER_FLAGS_DEBUG:STRING=
>
> //Flags used by the linker during the creation of modules during
> // MINSIZEREL builds.
> CMAKE_MODULE_LINKER_FLAGS_MINSIZEREL:STRING=
>
> //Flags used by the linker during the creation of modules during
> // NONE builds.
> CMAKE_MODULE_LINKER_FLAGS_NONE:STRING=
>
> //Flags used by the linker during the creation of modules during
> // RELEASE builds.
> CMAKE_MODULE_LINKER_FLAGS_RELEASE:STRING=
>
> //Flags used by the linker during the creation of modules during
> // RELWITHDEBINFO builds.
> CMAKE_MODULE_LINKER_FLAGS_RELWITHDEBINFO:STRING=
>
> //Path to a program.
> CMAKE_NM:FILEPATH=/usr/bin/nm
>
> //Path to a program.
> CMAKE_OBJCOPY:FILEPATH=/usr/bin/objcopy
>
> //Path to a program.
> CMAKE_OBJDUMP:FILEPATH=/usr/bin/objdump
>
> //Value Computed by CMake
> CMAKE_PROJECT_DESCRIPTION:STATIC=Bioparser is a c++ header only parsing
> library for several formats in bioinformatics (FASTA/Q, MHAP/PAF/SAM), with
> support for zlib compressed files.
>
> //Value Computed by CMake
> CMAKE_PROJECT_HOMEPAGE_URL:STATIC=
>
> //Value Computed by CMake
> CMAKE_PROJECT_NAME:STATIC=bioparser
>
> //Value Computed by CMake
> CMAKE_PROJECT_VERSION:STATIC=3.1.0
>
> //Value Computed by CMake
> CMAKE_PROJECT_VERSION_MAJOR:STATIC=3
>
> //Value Computed by CMake
> CMAKE_PROJECT_VERSION_MINOR:STATIC=1
>
> //Value Computed by CMake
> CMAKE_PROJECT_VERSION_PATCH:STATIC=0
>
> //Value Computed by CMake
> CMAKE_PROJECT_VERSION_TWEAK:STATIC=
>
> //Path to a program.
> CMAKE_RANLIB:FILEPATH=/usr/bin/ranlib
>
> //Path to a program.
> CMAKE_READELF:FILEPATH=/usr/bin/readelf
>
> //Flags used by the linker during the creation of shared libraries
> // during all build types.
> CMAKE_SHARED_LINKER_FLAGS:STRING=-Wl,-z,relro
>
> //Flags used by the linker during the creation of shared libraries
> // during DEBUG builds.
> CMAKE_SHARED_LINKER_FLAGS_DEBUG:STRING=
>
> //Flags used by the linker during the creation of shared libraries
> // during MINSIZEREL builds.
> CMAKE_SHARED_LINKER_FLAGS_MINSIZEREL:STRING=
>
> //Flags used by the linker during the creation of shared libraries
> // during NONE builds.
> CMAKE_SHARED_LINKER_FLAGS_NONE:STRING=
>
> //Flags used by the linker during the creation of shared libraries
> // during RELEASE builds.
> CMAKE_SHARED_LINKER_FLAGS_RELEASE:STRING=
>
> //Flags used by the linker during the creation of shared libraries
> // during RELWITHDEBINFO builds.
> CMAKE_SHARED_LINKER_FLAGS_RELWITHDEBINFO:STRING=
>
> //No help, variable specified on the command line.
> CMAKE_SKIP_INSTALL_ALL_DEPENDENCY:UNINITIALIZED=ON
>
> //If set, runtime paths are not added when installing shared libraries,
> // but are added when building.
> CMAKE_SKIP_INSTALL_RPATH:BOOL=NO
>
> //If set, runtime paths are not added when using shared libraries.
> CMAKE_SKIP_RPATH:BOOL=NO
>
> //Flags used by the linker during the creation of static libraries
> // during all build types.
> CMAKE_STATIC_LINKER_FLAGS:STRING=
>
> //Flags used by the linker during the creation of static libraries
> // during DEBUG builds.
> CMAKE_STATIC_LINKER_FLAGS_DEBUG:STRING=
>
> //Flags used by the linker during the creation of static libraries
> // during MINSIZEREL builds.
> CMAKE_STATIC_LINKER_FLAGS_MINSIZEREL:STRING=
>
> //Flags used by the linker during the creation of static libraries
> // during NONE builds.
> CMAKE_STATIC_LINKER_FLAGS_NONE:STRING=
>
> //Flags used by the linker during the creation of static libraries
> // during RELEASE builds.
> CMAKE_STATIC_LINKER_FLAGS_RELEASE:STRING=
>
> //Flags used by the linker during the creation of static libraries
> // during RELWITHDEBINFO builds.
> CMAKE_STATIC_LINKER_FLAGS_RELWITHDEBINFO:STRING=
>
> //Path to a program.
> CMAKE_STRIP:FILEPATH=/usr/bin/strip
>
> //Path to a program.
> CMAKE_TAPI:FILEPATH=CMAKE_TAPI-NOTFOUND
>
> //If this value is on, makefiles will be generated without the
> // .SILENT directive, and all commands will be echoed to the console
> // during the make. This is useful for debugging only. With Visual
> // Studio IDE projects all commands are done without /nologo.
> CMAKE_VERBOSE_MAKEFILE:BOOL=ON
>
> //Directory under which to collect all populated content
> FETCHCONTENT_BASE_DIR:PATH=/build/reproducible-path/libbioparser-dev-3.1.0/obj-i686-linux-gnu/_deps
>
> //Disables all attempts to download or update content and assumes
> // source dirs already exist
> FETCHCONTENT_FULLY_DISCONNECTED:BOOL=ON
>
> //Enables QUIET option for all content population
> FETCHCONTENT_QUIET:BOOL=ON
>
> //When not empty, overrides where to find pre-populated content
> // for biosoup
> FETCHCONTENT_SOURCE_DIR_BIOSOUP:PATH=
>
> //Enables UPDATE_DISCONNECTED behavior for all content population
> FETCHCONTENT_UPDATES_DISCONNECTED:BOOL=OFF
>
> //The directory containing a CMake configuration file for GTest.
> GTest_DIR:PATH=/usr/lib/i386-linux-gnu/cmake/GTest
>
> //Path to a file.
> ZLIB_INCLUDE_DIR:PATH=/usr/include
>
> //Path to a library.
> ZLIB_LIBRARY_DEBUG:FILEPATH=ZLIB_LIBRARY_DEBUG-NOTFOUND
>
> //Path to a library.
> ZLIB_LIBRARY_RELEASE:FILEPATH=/usr/lib/i386-linux-gnu/libz.so
>
> //Value Computed by CMake
> bioparser_BINARY_DIR:STATIC=/build/reproducible-path/libbioparser-dev-3.1.0/obj-i686-linux-gnu
>
> //Value Computed by CMake
> bioparser_IS_TOP_LEVEL:STATIC=ON
>
> //Value Computed by CMake
> bioparser_SOURCE_DIR:STATIC=/build/reproducible-path/libbioparser-dev-3.1.0
>
> //Build unit tests
> bioparser_build_tests:BOOL=ON
>
> //Generate install target
> bioparser_install:BOOL=ON
>
> //The directory containing a CMake configuration file for biosoup.
> biosoup_DIR:PATH=biosoup_DIR-NOTFOUND
>
>
> ########################
> # INTERNAL cache entries
> ########################
>
> //ADVANCED property for variable: CMAKE_ADDR2LINE
> CMAKE_ADDR2LINE-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_AR
> CMAKE_AR-ADVANCED:INTERNAL=1
> //This is the directory where this CMakeCache.txt was created
> CMAKE_CACHEFILE_DIR:INTERNAL=/build/reproducible-path/libbioparser-dev-3.1.0/obj-i686-linux-gnu
> //Major version of cmake used to create the current loaded cache
> CMAKE_CACHE_MAJOR_VERSION:INTERNAL=3
> //Minor version of cmake used to create the current loaded cache
> CMAKE_CACHE_MINOR_VERSION:INTERNAL=31
> //Patch version of cmake used to create the current loaded cache
> CMAKE_CACHE_PATCH_VERSION:INTERNAL=6
> //ADVANCED property for variable: CMAKE_COLOR_MAKEFILE
> CMAKE_COLOR_MAKEFILE-ADVANCED:INTERNAL=1
> //Path to CMake executable.
> CMAKE_COMMAND:INTERNAL=/usr/bin/cmake
> //Path to cpack program executable.
> CMAKE_CPACK_COMMAND:INTERNAL=/usr/bin/cpack
> //Path to ctest program executable.
> CMAKE_CTEST_COMMAND:INTERNAL=/usr/bin/ctest
> //ADVANCED property for variable: CMAKE_CXX_COMPILER
> CMAKE_CXX_COMPILER-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_CXX_COMPILER_AR
> CMAKE_CXX_COMPILER_AR-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_CXX_COMPILER_RANLIB
> CMAKE_CXX_COMPILER_RANLIB-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_CXX_FLAGS
> CMAKE_CXX_FLAGS-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_CXX_FLAGS_DEBUG
> CMAKE_CXX_FLAGS_DEBUG-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_CXX_FLAGS_MINSIZEREL
> CMAKE_CXX_FLAGS_MINSIZEREL-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_CXX_FLAGS_NONE
> CMAKE_CXX_FLAGS_NONE-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_CXX_FLAGS_RELEASE
> CMAKE_CXX_FLAGS_RELEASE-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_CXX_FLAGS_RELWITHDEBINFO
> CMAKE_CXX_FLAGS_RELWITHDEBINFO-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_DLLTOOL
> CMAKE_DLLTOOL-ADVANCED:INTERNAL=1
> //Executable file format
> CMAKE_EXECUTABLE_FORMAT:INTERNAL=ELF
> //ADVANCED property for variable: CMAKE_EXE_LINKER_FLAGS
> CMAKE_EXE_LINKER_FLAGS-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_EXE_LINKER_FLAGS_DEBUG
> CMAKE_EXE_LINKER_FLAGS_DEBUG-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_EXE_LINKER_FLAGS_MINSIZEREL
> CMAKE_EXE_LINKER_FLAGS_MINSIZEREL-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_EXE_LINKER_FLAGS_NONE
> CMAKE_EXE_LINKER_FLAGS_NONE-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_EXE_LINKER_FLAGS_RELEASE
> CMAKE_EXE_LINKER_FLAGS_RELEASE-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_EXE_LINKER_FLAGS_RELWITHDEBINFO
> CMAKE_EXE_LINKER_FLAGS_RELWITHDEBINFO-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_EXPORT_COMPILE_COMMANDS
> CMAKE_EXPORT_COMPILE_COMMANDS-ADVANCED:INTERNAL=1
> //Name of external makefile project generator.
> CMAKE_EXTRA_GENERATOR:INTERNAL=
> //Name of generator.
> CMAKE_GENERATOR:INTERNAL=Unix Makefiles
> //Generator instance identifier.
> CMAKE_GENERATOR_INSTANCE:INTERNAL=
> //Name of generator platform.
> CMAKE_GENERATOR_PLATFORM:INTERNAL=
> //Name of generator toolset.
> CMAKE_GENERATOR_TOOLSET:INTERNAL=
> //Test CMAKE_HAVE_LIBC_PTHREAD
> CMAKE_HAVE_LIBC_PTHREAD:INTERNAL=1
> //Source directory with the top level CMakeLists.txt file for this
> // project
> CMAKE_HOME_DIRECTORY:INTERNAL=/build/reproducible-path/libbioparser-dev-3.1.0
> //ADVANCED property for variable: CMAKE_INSTALL_BINDIR
> CMAKE_INSTALL_BINDIR-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_INSTALL_DATADIR
> CMAKE_INSTALL_DATADIR-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_INSTALL_DATAROOTDIR
> CMAKE_INSTALL_DATAROOTDIR-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_INSTALL_DOCDIR
> CMAKE_INSTALL_DOCDIR-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_INSTALL_INCLUDEDIR
> CMAKE_INSTALL_INCLUDEDIR-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_INSTALL_INFODIR
> CMAKE_INSTALL_INFODIR-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_INSTALL_LIBDIR
> CMAKE_INSTALL_LIBDIR-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_INSTALL_LIBEXECDIR
> CMAKE_INSTALL_LIBEXECDIR-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_INSTALL_LOCALEDIR
> CMAKE_INSTALL_LOCALEDIR-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_INSTALL_LOCALSTATEDIR
> CMAKE_INSTALL_LOCALSTATEDIR-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_INSTALL_MANDIR
> CMAKE_INSTALL_MANDIR-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_INSTALL_OLDINCLUDEDIR
> CMAKE_INSTALL_OLDINCLUDEDIR-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_INSTALL_RUNSTATEDIR
> CMAKE_INSTALL_RUNSTATEDIR-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_INSTALL_SBINDIR
> CMAKE_INSTALL_SBINDIR-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_INSTALL_SHAREDSTATEDIR
> CMAKE_INSTALL_SHAREDSTATEDIR-ADVANCED:INTERNAL=1
> //Install .so files without execute permission.
> CMAKE_INSTALL_SO_NO_EXE:INTERNAL=1
> //ADVANCED property for variable: CMAKE_INSTALL_SYSCONFDIR
> CMAKE_INSTALL_SYSCONFDIR-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_LINKER
> CMAKE_LINKER-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_MAKE_PROGRAM
> CMAKE_MAKE_PROGRAM-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_MODULE_LINKER_FLAGS
> CMAKE_MODULE_LINKER_FLAGS-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_MODULE_LINKER_FLAGS_DEBUG
> CMAKE_MODULE_LINKER_FLAGS_DEBUG-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_MODULE_LINKER_FLAGS_MINSIZEREL
> CMAKE_MODULE_LINKER_FLAGS_MINSIZEREL-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_MODULE_LINKER_FLAGS_NONE
> CMAKE_MODULE_LINKER_FLAGS_NONE-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_MODULE_LINKER_FLAGS_RELEASE
> CMAKE_MODULE_LINKER_FLAGS_RELEASE-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_MODULE_LINKER_FLAGS_RELWITHDEBINFO
> CMAKE_MODULE_LINKER_FLAGS_RELWITHDEBINFO-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_NM
> CMAKE_NM-ADVANCED:INTERNAL=1
> //number of local generators
> CMAKE_NUMBER_OF_MAKEFILES:INTERNAL=1
> //ADVANCED property for variable: CMAKE_OBJCOPY
> CMAKE_OBJCOPY-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_OBJDUMP
> CMAKE_OBJDUMP-ADVANCED:INTERNAL=1
> //Platform information initialized
> CMAKE_PLATFORM_INFO_INITIALIZED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_RANLIB
> CMAKE_RANLIB-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_READELF
> CMAKE_READELF-ADVANCED:INTERNAL=1
> //Path to CMake installation.
> CMAKE_ROOT:INTERNAL=/usr/share/cmake-3.31
> //ADVANCED property for variable: CMAKE_SHARED_LINKER_FLAGS
> CMAKE_SHARED_LINKER_FLAGS-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_SHARED_LINKER_FLAGS_DEBUG
> CMAKE_SHARED_LINKER_FLAGS_DEBUG-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_SHARED_LINKER_FLAGS_MINSIZEREL
> CMAKE_SHARED_LINKER_FLAGS_MINSIZEREL-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_SHARED_LINKER_FLAGS_NONE
> CMAKE_SHARED_LINKER_FLAGS_NONE-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_SHARED_LINKER_FLAGS_RELEASE
> CMAKE_SHARED_LINKER_FLAGS_RELEASE-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_SHARED_LINKER_FLAGS_RELWITHDEBINFO
> CMAKE_SHARED_LINKER_FLAGS_RELWITHDEBINFO-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_SKIP_INSTALL_RPATH
> CMAKE_SKIP_INSTALL_RPATH-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_SKIP_RPATH
> CMAKE_SKIP_RPATH-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_STATIC_LINKER_FLAGS
> CMAKE_STATIC_LINKER_FLAGS-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_STATIC_LINKER_FLAGS_DEBUG
> CMAKE_STATIC_LINKER_FLAGS_DEBUG-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_STATIC_LINKER_FLAGS_MINSIZEREL
> CMAKE_STATIC_LINKER_FLAGS_MINSIZEREL-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_STATIC_LINKER_FLAGS_NONE
> CMAKE_STATIC_LINKER_FLAGS_NONE-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_STATIC_LINKER_FLAGS_RELEASE
> CMAKE_STATIC_LINKER_FLAGS_RELEASE-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_STATIC_LINKER_FLAGS_RELWITHDEBINFO
> CMAKE_STATIC_LINKER_FLAGS_RELWITHDEBINFO-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_STRIP
> CMAKE_STRIP-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: CMAKE_TAPI
> CMAKE_TAPI-ADVANCED:INTERNAL=1
> //uname command
> CMAKE_UNAME:INTERNAL=/usr/bin/uname
> //ADVANCED property for variable: CMAKE_VERBOSE_MAKEFILE
> CMAKE_VERBOSE_MAKEFILE-ADVANCED:INTERNAL=1
> //Details about finding ZLIB
> FIND_PACKAGE_MESSAGE_DETAILS_ZLIB:INTERNAL=[/usr/lib/i386-linux-gnu/libz.so][/usr/include][c
> ][v1.3.1(1.2.8)]
> //ADVANCED property for variable: ZLIB_INCLUDE_DIR
> ZLIB_INCLUDE_DIR-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: ZLIB_LIBRARY_DEBUG
> ZLIB_LIBRARY_DEBUG-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: ZLIB_LIBRARY_RELEASE
> ZLIB_LIBRARY_RELEASE-ADVANCED:INTERNAL=1
> //linker supports push/pop state
> _CMAKE_CXX_LINKER_PUSHPOP_STATE_SUPPORTED:INTERNAL=TRUE
> //linker supports push/pop state
> _CMAKE_LINKER_PUSHPOP_STATE_SUPPORTED:INTERNAL=TRUE
> //CMAKE_INSTALL_PREFIX during last run
> _GNUInstallDirs_LAST_CMAKE_INSTALL_PREFIX:INTERNAL=/usr
>
> dh_auto_configure: error: cd obj-i686-linux-gnu &&
> DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake
> -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None
> -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var
> -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF
> -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON
> -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run
> -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles"
> -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu
> -Dbioparser_build_tests=ON .. returned exit code 1
> make[1]: *** [debian/rules:11: override_dh_auto_configure] Error 2
The full build log is available from:
http://qa-logs.debian.net/2025/04/14/libbioparser-dev_3.1.0-1_testing-i386.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20250414;users=lu...@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20250414&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: libbiosoup-dev
Source-Version: 0.11.0-3
Done: Nilesh Patra <nil...@debian.org>
We believe that the bug you reported is fixed in the latest version of
libbiosoup-dev, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1103...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Nilesh Patra <nil...@debian.org> (supplier of updated libbiosoup-dev package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sun, 04 May 2025 20:47:21 +0530
Source: libbiosoup-dev
Architecture: source
Version: 0.11.0-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Nilesh Patra <nil...@debian.org>
Closes: 1103129
Changes:
libbiosoup-dev (0.11.0-3) unstable; urgency=medium
.
* Team Upload.
* d/patches: remove arch dep stuff in .cmake files
(Closes: #1103129)
* Bump Standards-Version to 4.7.0 (no changes needed)
Checksums-Sha1:
82b53a50cee3a5d684d4df318a847374f378b8e8 1424 libbiosoup-dev_0.11.0-3.dsc
4039f43dae570be1cd79839a66f028f7d47aeb25 2904
libbiosoup-dev_0.11.0-3.debian.tar.xz
fda41753b65668d16a368030958142af245f5dc5 6056
libbiosoup-dev_0.11.0-3_amd64.buildinfo
Checksums-Sha256:
4cc175ff1eb4c3fc8766a932d063d8c8c7770006e1d22fbfa4fe10a68fe52572 1424
libbiosoup-dev_0.11.0-3.dsc
d37be49d23e453b2078fbd33ea97ef665adfc0ebb8d127a00f87c9d4b9eba6ea 2904
libbiosoup-dev_0.11.0-3.debian.tar.xz
83e9ebc410bd6ebbbad6ceaef2025d9fc939a02cd8548ad70289991c6bed2add 6056
libbiosoup-dev_0.11.0-3_amd64.buildinfo
Files:
71e19ff5ba5e4b1206de9637bc75219a 1424 science optional
libbiosoup-dev_0.11.0-3.dsc
6c0bcabb3496aede6bff93d7f28a6a25 2904 science optional
libbiosoup-dev_0.11.0-3.debian.tar.xz
c899f14f59d8863579cf4bd6a1d982f2 6056 science optional
libbiosoup-dev_0.11.0-3_amd64.buildinfo
-----BEGIN PGP SIGNATURE-----
iIgEARYKADAWIQSglbZu4JAkvuai8HIqJ5BL1yQ+2gUCaBeJ/xIcbmlsZXNoQGRl
Ymlhbi5vcmcACgkQKieQS9ckPtqyXwD8C489CVnkcIMpljprflHwk9SN/eVctxSR
VlTmd9UXqlQBAPu8A4OFim3spGz0U02DdDlC5gp6PD6Ugm6kRzSo7VUH
=UtIt
-----END PGP SIGNATURE-----
pgpZnAC1RLthq.pgp
Description: PGP signature
--- End Message ---
