Your message dated Tue, 22 Apr 2025 11:49:30 +0000
with message-id <e1u7c82-007cvg...@fasolo.debian.org>
and subject line Bug#1103004: fixed in skimage 0.25.2-2
has caused the Debian Bug report #1103004,
regarding skimage: FTBFS in testing/arm64: dh_auto_test: error: pybuild --test
-i python{version} -p 3.13 returned exit code 13
to be marked as done.This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 1103004: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1103004 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: skimage Version: 0.25.2-1 Severity: serious Justification: FTBFS Tags: trixie sid ftbfs User: lu...@debian.org Usertags: ftbfs-20250413 ftbfs-trixie Hi, During a rebuild of all packages in testing (trixie), your package failed to build on arm64. Relevant part (hopefully): > make[1]: Entering directory '/build/reproducible-path/skimage-0.25.2' > # pass > make[1]: Leaving directory '/build/reproducible-path/skimage-0.25.2' > dh_auto_test -O--buildsystem=pybuild -Npython3-skimage -Npython-skimage-doc > I: pybuild base:311: cd > /build/reproducible-path/skimage-0.25.2/.pybuild/cpython3_3.13/build; > python3.13 -m pytest > ============================= test session starts > ============================== > platform linux -- Python 3.13.2, pytest-8.3.5, pluggy-1.5.0 > rootdir: /build/reproducible-path/skimage-0.25.2/.pybuild/cpython3_3.13/build > configfile: pyproject.toml > testpaths: skimage, benchmarks > plugins: doctestplus-1.4.0, typeguard-4.4.2 > collected 9012 items / 4 skipped > > skimage/_shared/tests/test_coord.py .................................... [ > 0%] > ....... [ > 0%] > skimage/_shared/tests/test_dtype.py .................. [ > 0%] > skimage/_shared/tests/test_fast_exp.py . [ > 0%] > skimage/_shared/tests/test_geometry.py ... [ > 0%] > skimage/_shared/tests/test_interpolation.py . [ > 0%] > skimage/_shared/tests/test_safe_as_int.py .. [ > 0%] > skimage/_shared/tests/test_testing.py ....... [ > 0%] > skimage/_shared/tests/test_utils.py .................................... [ > 1%] > ........................................................................ [ > 2%] > . [ > 2%] > skimage/_shared/tests/test_version_requirements.py .... [ > 2%] > skimage/_shared/tests/test_warnings.py ......... [ > 2%] > skimage/color/tests/test_adapt_rgb.py ....... [ > 2%] > skimage/color/tests/test_colorconv.py .................................. [ > 2%] > ........................................................................ [ > 3%] > ........................................................................ [ > 4%] > ........................................................................ [ > 5%] > .....................................................................XXX [ > 5%] > ... [ > 5%] > skimage/color/tests/test_colorlabel.py ............................ [ > 6%] > skimage/color/tests/test_delta_e.py ............................. [ > 6%] > skimage/data/tests/test_data.py ss......s...........s.sssss. [ > 6%] > skimage/draw/tests/test_draw.py ........................................ [ > 7%] > .......... [ > 7%] > skimage/draw/tests/test_draw3d.py ........ [ > 7%] > skimage/draw/tests/test_draw_nd.py ... [ > 7%] > skimage/draw/tests/test_polygon2mask.py . [ > 7%] > skimage/draw/tests/test_random_shapes.py ................... [ > 7%] > skimage/exposure/tests/test_exposure.py ................................ [ > 8%] > ........................................................................ [ > 8%] > ........ss [ > 8%] > skimage/exposure/tests/test_histogram_matching.py ............. [ > 9%] > skimage/feature/tests/test_basic_features.py ............. [ > 9%] > skimage/feature/tests/test_blob.py ..................................... [ > 9%] > ........................................ [ > 10%] > skimage/feature/tests/test_brief.py ............... [ > 10%] > skimage/feature/tests/test_canny.py ............ [ > 10%] > skimage/feature/tests/test_cascade.py . [ > 10%] > skimage/feature/tests/test_censure.py ....... [ > 10%] > skimage/feature/tests/test_corner.py ................................... [ > 10%] > .................................. [ > 11%] > skimage/feature/tests/test_daisy.py ........ [ > 11%] > skimage/feature/tests/test_fisher_vector.py ............. [ > 11%] > skimage/feature/tests/test_haar.py ..................................... [ > 11%] > .................. [ > 12%] > skimage/feature/tests/test_hog.py .................... [ > 12%] > skimage/feature/tests/test_match.py ...... [ > 12%] > skimage/feature/tests/test_orb.py ............. [ > 12%] > skimage/feature/tests/test_peak.py ..................................... [ > 12%] > ....................... [ > 13%] > skimage/feature/tests/test_sift.py ....... [ > 13%] > skimage/feature/tests/test_template.py ........... [ > 13%] > skimage/feature/tests/test_texture.py ................................. [ > 13%] > skimage/feature/tests/test_util.py ................ [ > 13%] > skimage/filters/rank/tests/test_rank.py ................................ [ > 14%] > ........................................................................ [ > 15%] > .........................................sssssssssssssssssssssssssssssss [ > 15%] > sssssssssssssssssssssss................................................. [ > 16%] > ........................................................................ [ > 17%] > ........................................................................ [ > 18%] > ........................................................................ [ > 19%] > ............ [ > 19%] > skimage/filters/tests/test_correlate.py ................... [ > 19%] > skimage/filters/tests/test_edges.py .................................... [ > 19%] > ........................................................ [ > 20%] > skimage/filters/tests/test_fft_based.py ................................ [ > 20%] > ................ [ > 21%] > skimage/filters/tests/test_gabor.py ................ [ > 21%] > skimage/filters/tests/test_gaussian.py ................................. [ > 21%] > ..... [ > 21%] > skimage/filters/tests/test_lpi_filter.py ............. [ > 21%] > skimage/filters/tests/test_median.py .............. [ > 21%] > skimage/filters/tests/test_ridges.py ........................ [ > 22%] > skimage/filters/tests/test_thresholding.py ............................. [ > 22%] > ........................................................................ [ > 23%] > ................ [ > 23%] > skimage/filters/tests/test_unsharp_mask.py ............................. [ > 23%] > ........................................................................ 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[ > 64%] > skimage/graph/tests/test_rag.py ........F... [ > 65%] > skimage/graph/tests/test_spath.py ... [ > 65%] > skimage/io/tests/test_collection.py ............. [ > 65%] > skimage/io/tests/test_imageio.py .......... [ > 65%] > skimage/io/tests/test_io.py ...x............. [ > 65%] > skimage/io/tests/test_mpl_imshow.py ....... [ > 65%] > skimage/io/tests/test_multi_image.py ....... [ > 65%] > skimage/io/tests/test_pil.py ......................... [ > 66%] > skimage/io/tests/test_plugin.py ........... [ > 66%] > skimage/io/tests/test_sift.py .. [ > 66%] > skimage/io/tests/test_tifffile.py ...................................... [ > 66%] > ........................... [ > 66%] > skimage/measure/tests/test_block.py .......... [ > 66%] > skimage/measure/tests/test_blur_effect.py ...s..... [ > 67%] > skimage/measure/tests/test_ccomp.py .................... [ > 67%] > skimage/measure/tests/test_colocalization.py ..... [ > 67%] > skimage/measure/tests/test_entropy.py .. [ > 67%] > skimage/measure/tests/test_find_contours.py .XX.............. [ > 67%] > skimage/measure/tests/test_fit.py ...............X.............. [ > 67%] > skimage/measure/tests/test_label.py ...... [ > 67%] > skimage/measure/tests/test_marching_cubes.py ........ [ > 68%] > skimage/measure/tests/test_moments.py .................................. [ > 68%] > .......................................... [ > 68%] > skimage/measure/tests/test_pnpoly.py ..... [ > 68%] > skimage/measure/tests/test_polygon.py .. [ > 68%] > skimage/measure/tests/test_profile.py ......................... [ > 69%] > skimage/measure/tests/test_regionprops.py .............................. [ > 69%] > ........................................................................ [ > 70%] > ........................ [ > 70%] > skimage/metrics/tests/test_segmentation_metrics.py ...... [ > 70%] > skimage/metrics/tests/test_set_metrics.py .............................. [ > 71%] > ............... 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[ > 83%] > skimage/morphology/tests/test_reconstruction.py ........................ [ > 84%] > ....... [ > 84%] > skimage/morphology/tests/test_skeletonize.py ........................... [ > 84%] > .......................... [ > 84%] > skimage/morphology/tests/test_util.py .................... [ > 85%] > skimage/registration/tests/test_ilk.py ..................... [ > 85%] > skimage/registration/tests/test_masked_phase_cross_correlation.py ..s... [ > 85%] > ....... [ > 85%] > skimage/registration/tests/test_phase_cross_correlation.py ............. [ > 85%] > ...ssssssssssssssss...... [ > 85%] > skimage/registration/tests/test_tvl1.py ......... [ > 86%] > skimage/restoration/tests/test_denoise.py .............................. [ > 86%] > ........................................................................ [ > 87%] > ................................................................. [ > 87%] > skimage/restoration/tests/test_inpaint.py .............................. [ > 88%] > ........ [ > 88%] > skimage/restoration/tests/test_j_invariant.py ........ [ > 88%] > skimage/restoration/tests/test_restoration.py .................ssssss [ > 88%] > skimage/restoration/tests/test_rolling_ball.py ...................s [ > 88%] > skimage/restoration/tests/test_unwrap.py ................ [ > 89%] > skimage/segmentation/tests/test_active_contour_model.py ........... [ > 89%] > skimage/segmentation/tests/test_boundaries.py .............. [ > 89%] > skimage/segmentation/tests/test_chan_vese.py ............. [ > 89%] > skimage/segmentation/tests/test_clear_border.py ........ [ > 89%] > skimage/segmentation/tests/test_expand_labels.py .................... [ > 89%] > skimage/segmentation/tests/test_felzenszwalb.py ...... [ > 89%] > skimage/segmentation/tests/test_join.py ................................ [ > 90%] > ............... [ > 90%] > skimage/segmentation/tests/test_morphsnakes.py ....... 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[ > 99%] > skimage/util/tests/test_unique_rows.py ..... > [100%] > > =================================== FAILURES > =================================== > _____________________________ test_reproducibility > _____________________________ > > def test_reproducibility(): > """ensure cut_normalized returns the same output for the same input, > when specifying random seed > """ > img = data.coffee() > labels1 = segmentation.slic(img, compactness=30, n_segments=400, > start_label=0) > g = graph.rag_mean_color(img, labels1, mode='similarity') > results = [None] * 4 > for i in range(len(results)): > results[i] = graph.cut_normalized( > labels1, g, in_place=False, thresh=1e-3, rng=1234 > ) > graph.cut_normalized(labels1, g, in_place=False, thresh=1e-3, > rng=1234) > > for i in range(len(results) - 1): > > assert_array_equal(results[i], results[i + 1]) > E AssertionError: > E Arrays are not equal > E > E Mismatched elements: 196301 / 240000 (81.8%) > E Max absolute difference among violations: 394 > E Max relative difference among violations: 1. > E ACTUAL: array([[0, 0, 0, ..., 0, 0, 0], > E [0, 0, 0, ..., 0, 0, 0], > E [0, 0, 0, ..., 0, 0, 0],... > E DESIRED: array([[ 0, 0, 0, ..., 11, 11, 11], > E [ 0, 0, 0, ..., 11, 11, 11], > E [ 0, 0, 0, ..., 11, 11, 11],... > > skimage/graph/tests/test_rag.py:224: AssertionError > =================================== XPASSES > ==================================== > =========================== short test summary info > ============================ > SKIPPED [1] skimage/io/tests/test_fits.py:6: could not import 'astropy': No > module named 'astropy' > SKIPPED [1] skimage/io/tests/test_imread.py:17: could not import 'imread': No > module named 'imread' > SKIPPED [1] skimage/io/tests/test_simpleitk.py:8: could not import > 'SimpleITK': No module named 'SimpleITK' > SKIPPED [1] skimage/util/tests/test_apply_parallel.py:10: could not import > 'dask.array': No module named 'dask' > SKIPPED [1] skimage/data/tests/test_data.py:10: test fails without pooch > SKIPPED [1] skimage/data/tests/test_data.py:18: requires data downloaded from > internet > SKIPPED [1] skimage/data/tests/test_data.py:74: requires data downloaded from > internet > SKIPPED [1] skimage/data/tests/test_data.py:150: Needs python3-pooch and > internet connection > SKIPPED [1] skimage/data/tests/test_data.py:165: requires data downloaded > from internet > SKIPPED [1] skimage/data/tests/test_data.py:173: requires data downloaded > from internet > SKIPPED [1] skimage/data/tests/test_data.py:181: requires data downloaded > from internet > SKIPPED [1] skimage/data/tests/test_data.py:192: requires data downloaded > from internet > SKIPPED [1] skimage/data/tests/test_data.py:203: requires data downloaded > from internet > SKIPPED [1] skimage/exposure/tests/test_exposure.py:1370: dask python library > is not installed > SKIPPED [1] skimage/exposure/tests/test_exposure.py:1383: dask python library > is not installed > SKIPPED [54] skimage/filters/rank/tests/test_rank.py:157: requires data > downloaded from internet > SKIPPED [1] skimage/measure/tests/test_blur_effect.py:47: Needs python3-pooch > and internet connection > SKIPPED [1] skimage/morphology/tests/test_gray.py:71: requires data > downloaded from internet > SKIPPED [24] skimage/morphology/tests/test_gray.py:454: requires data > downloaded from internet > SKIPPED [6] skimage/morphology/tests/test_gray.py:474: requires data > downloaded from internet > SKIPPED [1] > skimage/registration/tests/test_masked_phase_cross_correlation.py:62: Needs > python3-pooch and internet connection > SKIPPED [16] skimage/registration/tests/test_phase_cross_correlation.py:180: > requires data downloaded from internet > SKIPPED [6] skimage/restoration/tests/test_restoration.py:165: requires data > downloaded from internet > SKIPPED [1] skimage/restoration/tests/test_rolling_ball.py:93: Needs > python3-pooch and internet connection > SKIPPED [1] skimage/transform/tests/test_geometric.py:648: Fails on Debian > XFAIL skimage/io/tests/test_io.py::test_imread_http_url - Local server does > not run at build time > XPASS > skimage/color/tests/test_colorconv.py::test_lab_lch_roundtrip_dtypes[float16] > - https://github.com/scikit-image/scikit-image/issues/6670 > XPASS > skimage/color/tests/test_colorconv.py::test_lab_lch_roundtrip_dtypes[float32] > - https://github.com/scikit-image/scikit-image/issues/6670 > XPASS > skimage/color/tests/test_colorconv.py::test_lab_lch_roundtrip_dtypes[float64] > - https://github.com/scikit-image/scikit-image/issues/6670 > XPASS skimage/measure/tests/test_find_contours.py::test_nodata[0.5] - Fails > on mipsel > XPASS skimage/measure/tests/test_find_contours.py::test_nodata[None] - Fails > on mipsel > XPASS skimage/measure/tests/test_fit.py::test_ellipse_parameter_stability - > https://github.com/scikit-image/scikit-image/issues/7061 > XPASS > skimage/transform/tests/test_warps.py::test_warp_clip_image_containing_nans[0] > - Fails on mipsel > XPASS > skimage/transform/tests/test_warps.py::test_warp_clip_image_containing_nans[1] > - Fails on mipsel > XPASS > skimage/transform/tests/test_warps.py::test_warp_clip_image_containing_nans[3] > - Fails on mipsel > XPASS skimage/transform/tests/test_warps.py::test_warp_clip_cval_is_nan[0] - > Fails on mipsel > XPASS skimage/transform/tests/test_warps.py::test_warp_clip_cval_is_nan[1] - > Fails on mipsel > XPASS skimage/transform/tests/test_warps.py::test_warp_clip_cval_is_nan[3] - > Fails on mipsel > XPASS > skimage/transform/tests/test_warps.py::test_resize_clip[float64-True-True-0] > - Fails on mips64el > XPASS > skimage/transform/tests/test_warps.py::test_resize_clip[float64-True-True-1] > - Fails on mips64el > XPASS > skimage/transform/tests/test_warps.py::test_resize_clip[float64-True-False-0] > - Fails on mips64el > XPASS > skimage/transform/tests/test_warps.py::test_resize_clip[float64-True-False-1] > - Fails on mips64el > XPASS > skimage/transform/tests/test_warps.py::test_resize_clip[float64-False-True-0] > - Fails on mips64el > XPASS > skimage/transform/tests/test_warps.py::test_resize_clip[float64-False-True-1] > - Fails on mips64el > XPASS > skimage/transform/tests/test_warps.py::test_resize_clip[float64-False-False-0] > - Fails on mips64el > XPASS > skimage/transform/tests/test_warps.py::test_resize_clip[float64-False-False-1] > - Fails on mips64el > XPASS > skimage/transform/tests/test_warps.py::test_resize_clip[uint8-True-True-0] - > Fails on mips64el > XPASS > skimage/transform/tests/test_warps.py::test_resize_clip[uint8-True-True-1] - > Fails on mips64el > XPASS > skimage/transform/tests/test_warps.py::test_resize_clip[uint8-True-False-0] - > Fails on mips64el > XPASS > skimage/transform/tests/test_warps.py::test_resize_clip[uint8-True-False-1] - > Fails on mips64el > XPASS > skimage/transform/tests/test_warps.py::test_resize_clip[uint8-False-True-0] - > Fails on mips64el > XPASS > skimage/transform/tests/test_warps.py::test_resize_clip[uint8-False-True-1] - > Fails on mips64el > XPASS > skimage/transform/tests/test_warps.py::test_resize_clip[uint8-False-False-0] > - Fails on mips64el > XPASS > skimage/transform/tests/test_warps.py::test_resize_clip[uint8-False-False-1] > - Fails on mips64el > FAILED skimage/graph/tests/test_rag.py::test_reproducibility - > AssertionError: > = 1 failed, 8860 passed, 126 skipped, 1 xfailed, 28 xpassed in 212.17s > (0:03:32) = > E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd > /build/reproducible-path/skimage-0.25.2/.pybuild/cpython3_3.13/build; > python3.13 -m pytest > dh_auto_test: error: pybuild --test -i python{version} -p 3.13 returned exit > code 13 The full build log is available from: http://qa-logs.debian.net/2025/04/13/skimage_0.25.2-1_testing.log All bugs filed during this archive rebuild are listed at: https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20250413;users=lu...@debian.org or: https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20250413&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
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--- Begin Message ---Source: skimage Source-Version: 0.25.2-2 Done: Colin Watson <cjwat...@debian.org> We believe that the bug you reported is fixed in the latest version of skimage, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 1103...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Colin Watson <cjwat...@debian.org> (supplier of updated skimage package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Tue, 22 Apr 2025 11:52:01 +0100 Source: skimage Architecture: source Version: 0.25.2-2 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers <debian-science-maintain...@lists.alioth.debian.org> Changed-By: Colin Watson <cjwat...@debian.org> Closes: 1103004 Changes: skimage (0.25.2-2) unstable; urgency=medium . * Team upload. * Skip skimage/graph/tests/test_rag.py::test_reproducibility for now due to flakiness in SciPy's ARPACK implementation (closes: #1103004). Checksums-Sha1: 1937ac6d1d27db1e6d0802dac63a16db7308cd6f 3164 skimage_0.25.2-2.dsc bfe25f500c707b166133dd9b9bcad406eb0318d5 31348 skimage_0.25.2-2.debian.tar.xz Checksums-Sha256: c1b5c5f3bfa4306d227b1e465e478a5781e0013f80b75a98e2d23a440a38e34e 3164 skimage_0.25.2-2.dsc f9f1b533b1705e733c19073e3cb9bb64e2e9e339723a75ec1a4565f25a90b4d9 31348 skimage_0.25.2-2.debian.tar.xz Files: d737e8865f2d94ed567802fbb398707b 3164 python optional skimage_0.25.2-2.dsc 1dad58de763e83cf38e0ccc138a99bb3 31348 python optional skimage_0.25.2-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEErApP8SYRtvzPAcEROTWH2X2GUAsFAmgHdRMACgkQOTWH2X2G UAu13BAAkq1BuGOS9Jz0mZSM82VbQ/VSbIuYoDzr2gUE98BXGWZRfGJqL8WfKBEn qs57oR9Fs8wqwY2PgTETeymVn01K6BVfVWUNEPYXT912edUrWQreEte5IdeYwsNv rsLDL21L9D50Z8gIsr2sfFuE3BlUHKQqNp5J/GWGMtIzyPKzfthFKTpzLDauhXPe wDH85AXddilzTh77bxkHvYTNNsJljLfvipLRkt1WgeDcLtF8qnhBlgRBxdlt6bUI TkpuAYI2nLzXWcsLXmS6Kyyz1T+zvNO8h5dkI/v6tzMD8xL3QgileAHuQVLXEQit MQVWgLM8/q8JUNuGCEcGHQ/oPMB1fWwuwiNo1/9ooXZS+1MbqmQljH3dSjZIBRpY A3JdMiP935kXkoiKiHVGqy3C/YFPrSHcU6NCBWRYs+aiSQuBAwmIYjJrCcViYXn9 RPfwG9+0rRFS/HRzlK+4Sk3MOAvfFHskv5KvYBpc37zLo/guJdxSdvgmYczbIa2P QQVR5IuKLao0s7eL99Tt2RCHPuMh9oIYJotob0eqNlHbb1jopk05eIDWPlIFDQ2p AjBOPXE/nNAoXxrV7m4/DIpv0kgVQQAPgNfLgMrVMB9uOizgPCHDwGqcLl7o3CoB HTpSe7wyjv/Avq0vgWOyoUuaDgCPovcl2996K5dTK7X/KNA2JPU= =f87V -----END PGP SIGNATURE-----
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