Hi,
On 2025-04-19 14:09, Chris Hofstaedtler wrote:
coot's autopkgtests fail with rdkit 202503.1-2:
https://ci.debian.net/packages/c/coot/testing/amd64/60162582/
76s Traceback (most recent call last):
76s File "<frozen runpy>", line 198, in _run_module_as_main
76s File "<frozen runpy>", line 88, in _run_code
76s File "/usr/lib/python3/dist-packages/coot/pyrogen.py", line 38,
in <module>
76s import pyrogen_swig as pysw # relies on above rdkit.Chem import
AllChem (but ideally should not)
76s ^^^^^^^^^^^^^^^^^^^^^^^^^^^
76s File "/usr/lib/python3/dist-packages/coot/pyrogen_swig.py", line
12, in <module>
76s import _pyrogen_swig
76s ImportError:
/usr/lib/x86_64-linux-gnu/coot/libcoot-lidia-core.so.0: undefined
symbol: _ZN5RDKit6MolOps5addHsERKNS_5ROMolEbbPKSt6vectorIjSaIjEEb
coot/1.1.15+dfsg-1+b1 (in unstable) was a rebuild against
rdkit/202503.1-2 (in unstable). coot/1.1.15+dfsg-1 (in testing) is built
to work with rdkit/202409.6-2 (in testing). Mixing versions from stable
and unstable results in autopkgtest failures. I do not know how to do
this, but coot+rdkit has to migrate to testing together.
Best,
Andrius
