Your message dated Tue, 04 Mar 2025 00:51:52 +0000
with message-id <e1tpgvk-00gvrf...@fasolo.debian.org>
and subject line Bug#1093086: fixed in rdkit 202409.6-1
has caused the Debian Bug report #1093086,
regarding rdkit: FTBFS on big-endian architectures
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1093086: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1093086
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: rdkit
Version: 202409.2-3
Severity: serious
Tags: ftbfs
Hello,
rdkit FTBFS in sid on s390x and ppc64. This manifests in the failure of
many tests:
The following tests FAILED:
8 - testDataStructs (Subprocess aborted)
9 - testFPB (Subprocess aborted)
10 - testMultiFPB (Subprocess aborted)
13 - pyDiscreteValueVect (Failed)
14 - pySparseIntVect (Failed)
15 - pyFPB (Failed)
17 - testGrid (Subprocess aborted)
36 - graphmoltestPickler (Subprocess aborted)
54 - pickleTestsCatch (Failed)
79 - fileParsersCatchTest (Failed)
89 - substructTestCatch (Failed)
91 - testReaction (Subprocess aborted)
94 - rxnTestCatch (Failed)
95 - pyChemReactions (Failed)
96 - pyChemReactionEnumerations (Failed)
124 - pyMolDescriptors (Failed)
157 - moldraw2DTest1 (Subprocess aborted)
158 - moldraw2DTestCatch (Failed)
159 - moldraw2DRxnTest1 (Subprocess aborted)
160 - pyMolDraw2D (Failed)
179 - substructLibraryTest (Subprocess aborted)
191 - pyGraphMolWrap (Failed)
223 - pyRanker (Failed)
225 - pyFeatures (Failed)
From a quick glance it seems that a lot of problems are related to
Python pickle reading. Upstream has made some fixes related to
endianness in version 202409.4 [1], thus packaging the newer upstream
version might mitigate the problem.
[1] https://github.com/rdkit/rdkit/pull/8105
Andrius
--- End Message ---
--- Begin Message ---
Source: rdkit
Source-Version: 202409.6-1
Done: Michael Banck <mba...@debian.org>
We believe that the bug you reported is fixed in the latest version of
rdkit, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1093...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael Banck <mba...@debian.org> (supplier of updated rdkit package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 04 Mar 2025 01:24:41 +0100
Source: rdkit
Architecture: source
Version: 202409.6-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Michael Banck <mba...@debian.org>
Closes: 1093086
Changes:
rdkit (202409.6-1) unstable; urgency=medium
.
* New upstream point release.
* debian/patches/disable_pgsql_test.patch: Refreshed.
* debian/control.in, debian/control (Build-Depends): Add architecture-is-
little-endian (Closes: #1093086).
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