Bug#1095471: marked as done (minc-tools: FTBFS with NetCDF 4.9.3)

Debian Bug Tracking System Sat, 15 Feb 2025 20:21:25 -0800

Your message dated Sun, 16 Feb 2025 04:19:28 +0000
with message-id <e1tjw7s-00a2u0...@fasolo.debian.org>
and subject line Bug#1095471: fixed in minc-tools 2.3.00+dfsg-12
has caused the Debian Bug report #1095471,
regarding minc-tools: FTBFS with NetCDF 4.9.3
to be marked as done.


This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
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-- 
1095471: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1095471
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

--- Begin Message ---

Source: minc-tools
Version: 2.3.00+dfsg-11
Severity: important
Tags: upstream ftbfs
User: debian-...@lists.debian.org

Dear Maintainer,

Your package FBTFS with NetCDF 4.9.3 from experimental:

 /build/minc-tools-2.3.00+dfsg/progs/mincdump/mincdump.c:481:49: error: 
'_FillValue' undeclared (first use in this function); did you mean 
'NC_FillValue'?
   481 |                 nc_status = 
ncattinq(ncid,varid,_FillValue,&att.type,&att.len);
       |                                                 ^~~~~~~~~~
       |                                                 NC_FillValue
 /build/minc-tools-2.3.00+dfsg/progs/mincdump/mincdump.c:481:49: note: each 
undeclared identifier is reported only once for each function it appears in

The full buildlog is attached.

Kind Regards,

Bas

dpkg-checkbuilddeps: error: Unmet build dependencies: libminc-dev libnifti2-dev 
libnetcdf-dev (>= 1:4.9.3)
[1;33mW: Unmet build-dependency in source[0m
dh clean
   dh_auto_clean
   dh_clean
dpkg-source: info: using source format '3.0 (quilt)'
dpkg-source: info: building minc-tools using existing 
./minc-tools_2.3.00+dfsg.orig.tar.gz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: building minc-tools in 
minc-tools_2.3.00+dfsg-11.1.debian.tar.xz
dpkg-source: info: building minc-tools in minc-tools_2.3.00+dfsg-11.1.dsc
[0mI: Generated dsc will be overwritten by build result; not generating 
changes file[0m
I: Copying COW directory
I: forking: rm -rf /var/cache/pbuilder/build/cow.271012
I: forking: cp -al /var/cache/pbuilder/base-sid+rebuild.cow 
/var/cache/pbuilder/build/cow.271012
I: removed stale ilistfile /var/cache/pbuilder/build/cow.271012/.ilist
I: forking: chroot /var/cache/pbuilder/build/cow.271012 cowdancer-ilistcreate 
/.ilist 'find . -xdev -path ./home -prune -o \( \( -type l -o -type f \) -a 
-links +1 -print0 \) | xargs -0 stat --format '%d %i ''
I: Invoking pbuilder
I: forking: pbuilder build --debbuildopts  --debbuildopts  --buildplace 
/var/cache/pbuilder/build/cow.271012 --buildresult .. --mirror 
http://ftp.nl.debian.org/debian/ --distribution sid --no-targz 
--internal-chrootexec 'chroot /var/cache/pbuilder/build/cow.271012 cow-shell' 
/home/bas/tmp/debian/minc-tools_2.3.00+dfsg-11.1.dsc
[0mI: Running in no-targz mode[0m
[0mI: pbuilder: network access will be disabled during build[0m
[0mI: Current time: Sat Feb  8 10:59:06 CET 2025[0m
[0mI: pbuilder-time-stamp: 1739008746[0m
[0mI: copying local configuration[0m
[1;33mW: --override-config is not set; not updating apt.conf Read the manpage 
for details.[0m
[0mI: mounting /proc filesystem[0m
[0mI: mounting /sys filesystem[0m
[0mI: creating /{dev,run}/shm[0m
[0mI: mounting /dev/pts filesystem[0m
[0mI: redirecting /dev/ptmx to /dev/pts/ptmx[0m
[0mI: policy-rc.d already exists[0m
[0mI: Obtaining the cached apt archive contents[0m
[0mI: Copying source file[0m
[0mI: copying [/home/bas/tmp/debian/minc-tools_2.3.00+dfsg-11.1.dsc][0m
[0mI: copying [/home/bas/tmp/debian/minc-tools_2.3.00+dfsg.orig.tar.gz][0m
[0mI: copying 
[/home/bas/tmp/debian/minc-tools_2.3.00+dfsg-11.1.debian.tar.xz][0m
[0mI: Extracting source[0m
dpkg-source: warning: extracting unsigned source package 
(minc-tools_2.3.00+dfsg-11.1.dsc)
dpkg-source: info: extracting minc-tools in minc-tools-2.3.00+dfsg
dpkg-source: info: unpacking minc-tools_2.3.00+dfsg.orig.tar.gz
dpkg-source: info: unpacking minc-tools_2.3.00+dfsg-11.1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 01_mincedit-sensible-viewer.diff
dpkg-source: info: applying build-with-libnifti
dpkg-source: info: applying hdf5-1.10-support.patch
dpkg-source: info: applying spelling.patch
dpkg-source: info: applying fix_manpages.patch
dpkg-source: info: applying fix-gcc10-build.patch
dpkg-source: info: applying mnc2nii-use-size-t.patch
[0mI: Not using root during the build.[0m
[0mI: Installing the build-deps[0m
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-ma...@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by 
pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), cmake, bison, flex, libminc-dev, 
libnifti2-dev, libnetcdf-dev (>= 1:4.9.3), zlib1g-dev, texlive-latex-base, 
libhdf5-dev, debhelper
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in 
'/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 17244 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring 
anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on cmake; however:
  Package cmake is not installed.
 pbuilder-satisfydepends-dummy depends on bison; however:
  Package bison is not installed.
 pbuilder-satisfydepends-dummy depends on flex; however:
  Package flex is not installed.
 pbuilder-satisfydepends-dummy depends on libminc-dev; however:
  Package libminc-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libnifti2-dev; however:
  Package libnifti2-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libnetcdf-dev (>= 1:4.9.3); however:
  Package libnetcdf-dev is not installed.
 pbuilder-satisfydepends-dummy depends on zlib1g-dev; however:
  Package zlib1g-dev is not installed.
 pbuilder-satisfydepends-dummy depends on texlive-latex-base; however:
  Package texlive-latex-base is not installed.
 pbuilder-satisfydepends-dummy depends on libhdf5-dev; however:
  Package libhdf5-dev is not installed.
 pbuilder-satisfydepends-dummy depends on debhelper; however:
  Package debhelper is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version 
(0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version 
(0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bison{a} 
bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} 
dh-strip-nondeterminism{a} dwz{a} file{a} flex{a} fontconfig-config{a} 
fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lmodern{a} gettext{a} 
gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} 
libarchive13t64{a} libbrotli1{a} libcairo2{a} libcurl4t64{a} 
libdebhelper-perl{a} libelf1t64{a} libexpat1{a} 
libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} 
libglib2.0-0t64{a} libgnutls30t64{a} libgraphite2-3{a} libharfbuzz0b{a} 
libice6{a} libicu72{a} libjsoncpp26{a} libkpathsea6{a} libldap2{a} 
libmagic-mgc{a} libmagic1t64{a} libmpfi0{a} libnghttp2-14{a} libnifti2-2{a} 
libnifti2-dev{a} libnifticdf-dev{a} libnifticdf2{a} libniftiio-dev{a} 
libniftiio2t64{a} libpaper-utils{a} libpaper2{a} libpipeline1{a} 
libpixman-1-0{a} libpng16-16t64{a} libpotrace0{a} libproc2-0{a} libpsl5t64{a} 
libptexenc1{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} 
libsm6{a} libssh2-1t64{a} libsynctex2{a} libtasn1-6{a} libteckit0{a} 
libtexlua53-5{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libtool{a} 
libuchardet0{a} libuv1t64{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} 
libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} 
libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6t64{a} libznz-dev{a} 
libznz3{a} libzzip-0-13t64{a} m4{a} man-db{a} po-debconf{a} procps{a} 
t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} 
texlive-latex-base{a} ucf{a} x11-common{a} xdg-utils{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  ca-certificates curl dvisvgm libarchive-cpio-perl libfile-mimeinfo-perl 
libfl-dev libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl 
libnet-dbus-perl libsasl2-modules libx11-protocol-perl linux-sysctl-defaults 
lmodern lynx psmisc publicsuffix shared-mime-info wget x11-utils 
x11-xserver-utils xdg-user-dirs 
0 packages upgraded, 107 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/88.2 MB of archives. After unpacking 281 MB will be used.
The following packages have unmet dependencies:
 pbuilder-satisfydepends-dummy : Depends: libminc-dev but it is not installable
                                 Depends: libnetcdf-dev (>= 1:4.9.3) but it is 
not installable
                                 Depends: libhdf5-dev but it is not installable
The following actions will resolve these dependencies:

      Remove the following packages:                            
1)      libcom-err2t64 [1.47.0-2.3+b1 (now)]                    

      Install the following packages:                           
2)      comerr-dev [2.1-1.47.2-1 (unstable)]                    
3)      hdf5-helpers [1.14.5+repack-3 (unstable)]               
4)      icu-devtools [72.1-6 (unstable)]                        
5)      krb5-multidev [1.21.3-4 (unstable)]                     
6)      libaec-dev [1.1.3-1+b1 (unstable)]                      
7)      libaec0 [1.1.3-1+b1 (unstable)]                         
8)      libbrotli-dev [1.1.0-2+b6 (unstable)]                   
9)      libcom-err2 [1.47.2-1 (unstable)]                       
10)     libcurl3t64-gnutls [8.11.1-1+b1 (unstable)]             
11)     libcurl4-gnutls-dev [8.11.1-1+b1 (unstable)]            
12)     libevent-2.1-7t64 [2.1.12-stable-10+b1 (unstable)]      
13)     libgfortran5 [14.2.0-16 (unstable)]                     
14)     libgmp-dev [2:6.3.0+dfsg-3 (unstable)]                  
15)     libgnutls-dane0t64 [3.8.8-2 (unstable)]                 
16)     libgnutls-openssl27t64 [3.8.8-2 (unstable)]             
17)     libgnutls28-dev [3.8.8-2 (unstable)]                    
18)     libgssrpc4t64 [1.21.3-4 (unstable)]                     
19)     libhdf5-310 [1.14.5+repack-3 (unstable)]                
20)     libhdf5-cpp-310 [1.14.5+repack-3 (unstable)]            
21)     libhdf5-dev [1.14.5+repack-3 (unstable)]                
22)     libhdf5-fortran-310 [1.14.5+repack-3 (unstable)]        
23)     libhdf5-hl-310 [1.14.5+repack-3 (unstable)]             
24)     libhdf5-hl-cpp-310 [1.14.5+repack-3 (unstable)]         
25)     libhdf5-hl-fortran-310 [1.14.5+repack-3 (unstable)]     
26)     libicu-dev [72.1-6 (unstable)]                          
27)     libidn2-dev [2.3.7-2+b1 (unstable)]                     
28)     libjpeg62-turbo [1:2.1.5-3+b1 (unstable)]               
29)     libjpeg62-turbo-dev [1:2.1.5-3+b1 (unstable)]           
30)     libkadm5clnt-mit12 [1.21.3-4 (unstable)]                
31)     libkadm5srv-mit12 [1.21.3-4 (unstable)]                 
32)     libkdb5-10t64 [1.21.3-4 (unstable)]                     
33)     libkrb5-dev [1.21.3-4 (unstable)]                       
34)     libldap-dev [2.6.9+dfsg-1 (unstable)]                   
35)     libminc-dev [2.4.06-2.1+b3 (unstable)]                  
36)     libminc2-5.3.0t64 [2.4.06-2.1+b3 (unstable)]            
37)     libnetcdf-dev [1:4.9.3-1~exp1 (unstable-rebuild)]       
38)     libnetcdf19t64 [1:4.9.2-7+b1 (unstable)]                
39)     libnetcdf22 [1:4.9.3-1~exp1 (unstable-rebuild)]         
40)     libnghttp2-dev [1.64.0-1 (unstable)]                    
41)     libnghttp3-9 [1.6.0-2 (unstable)]                       
42)     libnghttp3-dev [1.6.0-2 (unstable)]                     
43)     libngtcp2-16 [1.9.1-1 (unstable)]                       
44)     libngtcp2-crypto-gnutls-dev [1.9.1-1 (unstable)]        
45)     libngtcp2-crypto-gnutls8 [1.9.1-1 (unstable)]           
46)     libngtcp2-dev [1.9.1-1 (unstable)]                      
47)     libp11-kit-dev [0.25.5-3 (unstable)]                    
48)     libpkgconf3 [1.8.1-4 (unstable)]                        
49)     libpsl-dev [0.21.2-1.1+b1 (unstable)]                   
50)     librtmp-dev [2.4+20151223.gitfa8646d.1-2+b5 (unstable)] 
51)     libssh2-1-dev [1.11.1-1 (unstable)]                     
52)     libssl-dev [3.4.0-2 (unstable)]                         
53)     libsz2 [1.1.3-1+b1 (unstable)]                          
54)     libtasn1-6-dev [4.19.0-3+b3 (unstable)]                 
55)     libunbound8 [1.22.0-1+b1 (unstable)]                    
56)     libxml2-dev [2.12.7+dfsg+really2.9.14-0.2+b1 (unstable)]
57)     libzstd-dev [1.5.6+dfsg-2 (unstable)]                   
58)     nettle-dev [3.10-1+b1 (unstable)]                       
59)     pkgconf [1.8.1-4 (unstable)]                            
60)     pkgconf-bin [1.8.1-4 (unstable)]                        



The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bison{a} 
bsdextrautils{a} cmake{a} cmake-data{a} comerr-dev{a} debhelper{a} 
dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} flex{a} 
fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lmodern{a} 
gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} icu-devtools{a} 
intltool-debian{a} krb5-multidev{a} libaec-dev{a} libaec0{a} 
libarchive-zip-perl{a} libarchive13t64{a} libbrotli-dev{a} libbrotli1{a} 
libcairo2{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} 
libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libevent-2.1-7t64{a} 
libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} 
libfreetype6{a} libgfortran5{a} libglib2.0-0t64{a} libgmp-dev{a} 
libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} 
libgnutls30t64{a} libgraphite2-3{a} libgssrpc4t64{a} libharfbuzz0b{a} 
libhdf5-310{a} libhdf5-cpp-310{a} libhdf5-dev{a} libhdf5-fortran-310{a} 
libhdf5-hl-310{a} libhdf5-hl-cpp-310{a} libhdf5-hl-fortran-310{a} libice6{a} 
libicu-dev{a} libicu72{a} libidn2-dev{a} libjpeg62-turbo{a} 
libjpeg62-turbo-dev{a} libjsoncpp26{a} libkadm5clnt-mit12{a} 
libkadm5srv-mit12{a} libkdb5-10t64{a} libkpathsea6{a} libkrb5-dev{a} 
libldap-dev{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libminc-dev{a} 
libminc2-5.3.0t64{a} libmpfi0{a} libnetcdf-dev{a} libnetcdf19t64{a} 
libnetcdf22{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} 
libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} 
libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libnifti2-2{a} libnifti2-dev{a} 
libnifticdf-dev{a} libnifticdf2{a} libniftiio-dev{a} libniftiio2t64{a} 
libp11-kit-dev{a} libpaper-utils{a} libpaper2{a} libpipeline1{a} 
libpixman-1-0{a} libpkgconf3{a} libpng16-16t64{a} libpotrace0{a} libproc2-0{a} 
libpsl-dev{a} libpsl5t64{a} libptexenc1{a} librhash1{a} librtmp-dev{a} 
librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsm6{a} libssh2-1-dev{a} 
libssh2-1t64{a} libssl-dev{a} libsynctex2{a} libsz2{a} libtasn1-6{a} 
libtasn1-6-dev{a} libteckit0{a} libtexlua53-5{a} libtext-charwidth-perl{a} 
libtext-wrapi18n-perl{a} libtool{a} libuchardet0{a} libunbound8{a} libuv1t64{a} 
libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} 
libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2{a} 
libxml2-dev{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6t64{a} libznz-dev{a} 
libznz3{a} libzstd-dev{a} libzzip-0-13t64{a} m4{a} man-db{a} nettle-dev{a} 
pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} t1utils{a} tex-common{a} 
texlive-base{a} texlive-binaries{a} texlive-latex-base{a} ucf{a} x11-common{a} 
xdg-utils{a} zlib1g-dev{a} 
The following packages will be REMOVED:
  libcom-err2t64{a} 
The following packages are RECOMMENDED but will NOT be installed:
  ca-certificates curl dvisvgm libarchive-cpio-perl libfile-mimeinfo-perl 
libfl-dev libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl 
libnet-dbus-perl libsasl2-modules libtasn1-doc libx11-protocol-perl 
linux-sysctl-defaults lmodern lynx psmisc publicsuffix shared-mime-info wget 
x11-utils x11-xserver-utils xdg-user-dirs 
0 packages upgraded, 166 newly installed, 1 to remove and 0 not upgraded.
Need to get 0 B/119 MB of archives. After unpacking 409 MB will be used.
Writing extended state information...
Preconfiguring packages ...
dpkg: libcom-err2t64:amd64: dependency problems, but removing anyway as you 
requested:
 libss2t64:amd64 depends on libcom-err2t64 (>= 1.43.9).
 libkrb5-3:amd64 depends on libcom-err2 (>= 1.43.9); however:
  Package libcom-err2 is not installed.
  Package libcom-err2t64:amd64 which provides libcom-err2 is to be removed.
 libgssapi-krb5-2:amd64 depends on libcom-err2 (>= 1.43.9); however:
  Package libcom-err2 is not installed.
  Package libcom-err2t64:amd64 which provides libcom-err2 is to be removed.
 libcomerr2:amd64 depends on libcom-err2; however:
  Package libcom-err2 is not installed.
  Package libcom-err2t64:amd64 which provides libcom-err2 is to be removed.
 e2fsprogs depends on libcom-err2 (>= 1.43.9); however:
  Package libcom-err2 is not installed.
  Package libcom-err2t64:amd64 which provides libcom-err2 is to be removed.

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Selecting previously unselected package libcom-err2:amd64.
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Preparing to unpack .../000-libcom-err2_1.47.2-1_amd64.deb ...
Unpacking libcom-err2:amd64 (1.47.2-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../001-m4_1.4.19-5_amd64.deb ...
Unpacking m4 (1.4.19-5) ...
Selecting previously unselected package flex.
Preparing to unpack .../002-flex_2.6.4-8.2+b4_amd64.deb ...
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dpkg-genchanges -S  > ../minc-tools_2.3.00+dfsg-11.1_source.changes[0m
dpkg-buildpackage: info: source package minc-tools
dpkg-buildpackage: info: source version 2.3.00+dfsg-11.1
dpkg-buildpackage: info: source distribution UNRELEASED
dpkg-buildpackage: info: source changed by Bas Couwenberg <sebas...@debian.org>
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dpkg-source: info: using patch list from debian/patches/series
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progs/CMakeFiles/mincgen.dir/ncgentab.c.o -MF 
CMakeFiles/mincgen.dir/ncgentab.c.o.d -o CMakeFiles/mincgen.dir/ncgentab.c.o -c 
/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/ncgentab.c
[ 20%] Built target mincconvert
[ 20%] Building C object progs/CMakeFiles/mincgen.dir/ncgenyy.c.o
[ 20%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/eval.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc 
-DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 
-I/usr/lib/x86_64-linux-gnu/include 
-I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu 
-I/build/minc-tools-2.3.00+dfsg/progs/Proglib 
-I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs 
-I/build/minc-tools-2.3.00+dfsg/progs/minccalc 
-I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 
-Werror=implicit-function-declaration 
-ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 
-Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT 
progs/CMakeFiles/mincgen.dir/ncgenyy.c.o -MF 
CMakeFiles/mincgen.dir/ncgenyy.c.o.d -o CMakeFiles/mincgen.dir/ncgenyy.c.o -c 
/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/ncgenyy.c
cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc 
-DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 
-I/usr/lib/x86_64-linux-gnu/include 
-I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu 
-I/build/minc-tools-2.3.00+dfsg/progs/Proglib 
-I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs 
-I/build/minc-tools-2.3.00+dfsg/progs/minccalc 
-I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 
-Werror=implicit-function-declaration 
-ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong 
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-Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT 
progs/CMakeFiles/minccalc.dir/minccalc/eval.c.o -MF 
CMakeFiles/minccalc.dir/minccalc/eval.c.o.d -o 
CMakeFiles/minccalc.dir/minccalc/eval.c.o -c 
/build/minc-tools-2.3.00+dfsg/progs/minccalc/eval.c
/usr/bin/ld: warning: libnetcdf.so.19, needed by 
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/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/libminc2.so, may 
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-Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf
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/usr/bin/ld: warning: libnetcdf.so.19, needed by 
/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/libminc2.so, may 
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[ 20%] Built target mincexample1
In file included from /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y:14:
/build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y: In function 'yyparse':
[ 21%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/node.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc 
-DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 
-I/usr/lib/x86_64-linux-gnu/include 
-I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu 
-I/build/minc-tools-2.3.00+dfsg/progs/Proglib 
-I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs 
-I/build/minc-tools-2.3.00+dfsg/progs/minccalc 
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/build/minc-tools-2.3.00+dfsg/progs/minccalc/node.c
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/build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y:278:52: error: 
'_FillValue' undeclared (first use in this function); did you mean 
'NC_FillValue'?
  278 |                        if (STREQ(atts[natts].name, _FillValue) &&
      |                                                    ^~~~~~~~~~
/build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgen.h:13:36: note: in definition 
of macro 'STREQ'
   13 | #define STREQ(a, b)     (*(a) == *(b) && strcmp((a), (b)) == 0)
      |                                    ^
/build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y:278:52: note: each 
undeclared identifier is reported only once for each function it appears in
  278 |                        if (STREQ(atts[natts].name, _FillValue) &&
      |                                                    ^~~~~~~~~~
/build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgen.h:13:36: note: in definition 
of macro 'STREQ'
   13 | #define STREQ(a, b)     (*(a) == *(b) && strcmp((a), (b)) == 0)
      |                                    ^
cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc 
-DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 
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-I/build/minc-tools-2.3.00+dfsg/progs/Proglib 
-I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs 
-I/build/minc-tools-2.3.00+dfsg/progs/minccalc 
-I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 
-Werror=implicit-function-declaration 
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CMakeFiles/minccalc.dir/minccalc/ident.c.o.d -o 
CMakeFiles/minccalc.dir/minccalc/ident.c.o -c 
/build/minc-tools-2.3.00+dfsg/progs/minccalc/ident.c
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cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc 
-DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 
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cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc 
-DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 
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-DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 
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-I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs 
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CMakeFiles/minccalc.dir/minccalc/sym.c.o.d -o 
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cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc 
-DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 
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-DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 
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Error 2
[ 27%] Linking C executable minccalc
cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake 
-E cmake_link_script CMakeFiles/minccalc.dir/link.txt --verbose=1
/usr/bin/ld: warning: libnetcdf.so.19, needed by 
/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/libminc2.so, may 
conflict with libnetcdf.so.22
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration 
-ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 
-Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro 
-Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic 
-Wl,--dependency-file=CMakeFiles/minccalc.dir/link.d 
CMakeFiles/minccalc.dir/minccalc/minccalc.c.o 
CMakeFiles/minccalc.dir/minccalc/eval.c.o 
CMakeFiles/minccalc.dir/minccalc/ident.c.o 
CMakeFiles/minccalc.dir/minccalc/node.c.o 
CMakeFiles/minccalc.dir/minccalc/optim.c.o 
CMakeFiles/minccalc.dir/minccalc/scalar.c.o 
CMakeFiles/minccalc.dir/minccalc/sym.c.o 
CMakeFiles/minccalc.dir/minccalc/vector.c.o CMakeFiles/minccalc.dir/lex.c.o 
CMakeFiles/minccalc.dir/gram.c.o -o minccalc   -L/usr/lib/x86_64-linux-gnu/lib  
-Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lm 
-ldl -lnetcdf
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu'
[ 27%] Built target minccalc
make[2]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu'
make[1]: *** [Makefile:169: all] Error 2
make[1]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu'
dh_auto_build: error: cd obj-x86_64-linux-gnu && make -j11 "INSTALL=install 
--strip-program=true" VERBOSE=1 returned exit code 2
make: *** [debian/rules:25: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
[0mI: copying local configuration[0m
[0;31mE: Failed autobuilding of package[0m
[0mI: unmounting dev/ptmx filesystem[0m
[0mI: unmounting dev/pts filesystem[0m
[0mI: unmounting dev/shm filesystem[0m
[0mI: unmounting proc filesystem[0m
[0mI: unmounting sys filesystem[0m
I: Cleaning COW directory
I: forking: rm -rf /var/cache/pbuilder/build/cow.271012

--- End Message ---

--- Begin Message ---

Source: minc-tools
Source-Version: 2.3.00+dfsg-12
Done: Steve M. Robbins <s...@debian.org>

We believe that the bug you reported is fixed in the latest version of
minc-tools, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1095...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Steve M. Robbins <s...@debian.org> (supplier of updated minc-tools package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Sat, 15 Feb 2025 21:47:38 -0600
Source: minc-tools
Architecture: source
Version: 2.3.00+dfsg-12
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Steve M. Robbins <s...@debian.org>
Closes: 1095471
Changes:
 minc-tools (2.3.00+dfsg-12) unstable; urgency=medium
 .
   [ Steve Robbins ]
   * [71683d0] Apply patch from Sebastiaan Couwenberg <sebas...@xs4all.nl>
     to fix build with NetCDF 4.9.3.  Closes: #1095471.
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minc-tools_2.3.00+dfsg-12.debian.tar.xz
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minc-tools_2.3.00+dfsg-12_amd64.buildinfo

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--- End Message ---

Bug#1095471: marked as done (minc-tools: FTBFS with NetCDF 4.9.3)

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