Your message dated Tue, 11 Feb 2025 03:50:33 +0000
with message-id <e1thhi9-001xe5...@fasolo.debian.org>
and subject line Bug#1094713: fixed in mdtraj 1.10.3-1
has caused the Debian Bug report #1094713,
regarding mdtraj: autopkgtests fail with numpy 2.x
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
1094713: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1094713
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: mdtraj
Version: 1.10.1-2
Severity: serious
Control: block 1082237 by -1
https://ci.debian.net/packages/m/mdtraj/testing/amd64/57221846/
"RuntimeError: Failed to converge after 50 iterations"
"AssertionError: Dielectric tolerance not met!"
-- System Information:
Debian Release: trixie/sid
APT prefers unstable
APT policy: (500, 'unstable'), (500, 'testing'), (101, 'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 6.12.8-amd64 (SMP w/16 CPU threads; PREEMPT)
Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=ru_RU.UTF-8, LC_CTYPE=ru_RU.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
--- End Message ---
--- Begin Message ---
Source: mdtraj
Source-Version: 1.10.3-1
Done: Drew Parsons <dpars...@debian.org>
We believe that the bug you reported is fixed in the latest version of
mdtraj, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1094...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Drew Parsons <dpars...@debian.org> (supplier of updated mdtraj package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 11 Feb 2025 03:32:42 +0100
Source: mdtraj
Architecture: source
Version: 1.10.3-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Drew Parsons <dpars...@debian.org>
Closes: 1094713
Changes:
mdtraj (1.10.3-1) unstable; urgency=medium
.
* New upstream release
- supports Numpy 2. Closes: #1094713.
* debian patch revert_flaky_PR1972.patch reverts upstream PR#1972
since pytest flaky support is flaky:
"got an unexpected keyword argument 'condition'"
* debian/tests: apply Restrictions: needs-internet only to dssp and
pdb url tests that require internet to access datasources:
test_3, test_pdb_from_url, test_1vii_url_and_gz
Checksums-Sha1:
f894be220417277f3bfca83ca3c5e1c484e1f438 2677 mdtraj_1.10.3-1.dsc
a4489f0c7f8dd34f9fd678c5257c24b5f4834243 21993979 mdtraj_1.10.3.orig.tar.gz
7cb070eae7ef6cfeedaff3bade3930f6eeca2e45 296608 mdtraj_1.10.3-1.debian.tar.xz
749569a3be3500f736b18bdea150fc0abc249fdf 15352 mdtraj_1.10.3-1_amd64.buildinfo
Checksums-Sha256:
2056272dd7c47f45ba1af5173f64a1531d2c990d7dd5e2b36619777e4b25da2f 2677
mdtraj_1.10.3-1.dsc
e6204f7c8b37a4d18f1acab1b44391228000faaa84ac40d720ed99b35e4c0807 21993979
mdtraj_1.10.3.orig.tar.gz
cd8387758d661557be78901691085257bb575da85997e9a4e32fa9acde0d94a3 296608
mdtraj_1.10.3-1.debian.tar.xz
c72765b9c15d16af50f9fb21da0043bca3e9132787e35960ae047d21c7d6ec6e 15352
mdtraj_1.10.3-1_amd64.buildinfo
Files:
c9af7968e9ca4a76e3dd1261cfcd9739 2677 python optional mdtraj_1.10.3-1.dsc
6059fb3d7a6c29e24629bb80924dfd29 21993979 python optional
mdtraj_1.10.3.orig.tar.gz
07239aaf52b6d84b002f2c93396a397b 296608 python optional
mdtraj_1.10.3-1.debian.tar.xz
79f4369c438a4ae5e887e5e298e1fddc 15352 python optional
mdtraj_1.10.3-1_amd64.buildinfo
-----BEGIN PGP SIGNATURE-----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=/MZe
-----END PGP SIGNATURE-----
pgpzQkYScwa71.pgp
Description: PGP signature
--- End Message ---
