Your message dated Tue, 04 Feb 2025 10:20:40 +0000
with message-id <e1tfg2q-001fsp...@fasolo.debian.org>
and subject line Bug#1094700: fixed in openmm 8.1.2+dfsg-3
has caused the Debian Bug report #1094700,
regarding openmm: FTBFS with numpy 2.x: error: cannot convert ‘PyObject*’ {aka
‘_object*’} to ‘const PyArrayObject*’ {aka ‘const tagPyArrayObject_fields*’}
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
1094700: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1094700
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: openmm
Version: 8.1.2+dfsg-2
Severity: serious
Tags: ftbfs
Control: block 1082237 by -1
https://buildd.debian.org/status/fetch.php?pkg=openmm&arch=amd64&ver=8.1.2%2Bdfsg-2%2Bb1&stamp=1737990080&raw=0
In file included from /usr/lib/x86_64-linux-
gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913,
from /usr/lib/x86_64-linux-
gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12,
from /usr/lib/x86_64-linux-
gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5,
from src/swig_doxygen/OpenMMSwig.cxx:7413:
/usr/lib/x86_64-linux-
gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2:
warning: #warning "Using deprecated NumPy API, disable it with " "#define
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
src/swig_doxygen/OpenMMSwig.cxx: In function ‘int
Py_SequenceToVecVec3(PyObject*, std::vector<OpenMM::Vec3>&)’:
src/swig_doxygen/OpenMMSwig.cxx:7709:60: error: cannot convert ‘PyObject*’ {aka
‘_object*’} to ‘const PyArrayObject*’ {aka ‘const tagPyArrayObject_fields*’}
7709 | if (PyArray_Check(stripped) && PyArray_ISCARRAY_RO(stripped) &&
PyArray_NDIM(stripped) == 2 && PyArray_DIM(stripped, 1) == 3) {
| ^~~~~~~~
| |
| PyObject*
{aka _object*}
-- System Information:
Debian Release: trixie/sid
APT prefers unstable
APT policy: (500, 'unstable'), (500, 'testing'), (101, 'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 6.12.8-amd64 (SMP w/16 CPU threads; PREEMPT)
Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=ru_RU.UTF-8, LC_CTYPE=ru_RU.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
--- End Message ---
--- Begin Message ---
Source: openmm
Source-Version: 8.1.2+dfsg-3
Done: Andrius Merkys <mer...@debian.org>
We believe that the bug you reported is fixed in the latest version of
openmm, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1094...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andrius Merkys <mer...@debian.org> (supplier of updated openmm package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 04 Feb 2025 04:54:26 -0500
Source: openmm
Architecture: source
Version: 8.1.2+dfsg-3
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Andrius Merkys <mer...@debian.org>
Closes: 1094700
Changes:
openmm (8.1.2+dfsg-3) unstable; urgency=medium
.
* Backport upstream PR to fix Numpy 2 incompatibility (Closes: #1094700)
* Bump copyright years.
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