Your message dated Tue, 14 Jan 2025 06:49:16 +0000
with message-id <e1txajk-002dye...@fasolo.debian.org>
and subject line Bug#1090190: fixed in amgcl 1.4.4-1
has caused the Debian Bug report #1090190,
regarding amgcl: FTBFS: The following tests FAILED: 13 - test_pyamgcl (Failed)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
1090190: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1090190
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:amgcl
Version: 1.4.3-7
Severity: serious
Tags: ftbfs
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build:
--------------------------------------------------------------------------------
[...]
debian/rules build
dh build --with python3 --buildsystem=cmake
dh_update_autotools_config -O--buildsystem=cmake
dh_autoreconf -O--buildsystem=cmake
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- \
-DAMGCL_BUILD_TESTS=ON \
-DAMGCL_BUILD_EXAMPLES=ON \
-DAMGCL_DISABLE_RARE_COMPONENTS=OFF \
-DAMGCL_HAVE_PYTHON=ON \
-DAMGCL_HAVE_FORTRAN=ON
cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb
PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr
-DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc
-DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON
-DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF
-DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON
-DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run
-DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles"
-DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu
-DAMGCL_BUILD_TESTS=ON -DAMGCL_BUILD_EXAMPLES=ON
-DAMGCL_DISABLE_RARE_COMPONENTS=OFF -DAMGCL_HAVE_PYTHON=ON
-DAMGCL_HAVE_FORTRAN=ON ..
CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required):
[... snipped ...]
7: [1;32;49m*** No errors detected
7: [0;39;49m
11/13 Test #7: test_solver_ns_builtin ........... Passed 117.28 sec
test 13
Start 13: test_pyamgcl
13: Test command: /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/tests/test_pyamgcl.py
13: Working Directory: /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/tests
13: Environment variables:
13: PYTHONPATH=/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/tests/..
13: Test timeout computed to be: 10000000
12: Iterations: 13
12: Error: 3.95956e-09
12:
12: Relaxation as preconditioner: chebyshev
12: Using chebyshev as preconditioner
13: E.
13: ======================================================================
13: ERROR: test_preconditioner (__main__.TestPyAMGCL.test_preconditioner)
13: ----------------------------------------------------------------------
13: Traceback (most recent call last):
13: File "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/tests/test_pyamgcl.py", line
64, in test_preconditioner
13: x,info = bicgstab(A, rhs, M=P, tol=1e-3)
13: ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
13: TypeError: bicgstab() got an unexpected keyword argument 'tol'
13:
13: ----------------------------------------------------------------------
13: Ran 2 tests in 0.990s
13:
13: FAILED (errors=1)
12/13 Test #13: test_pyamgcl .....................***Failed 1.15 sec
E.
======================================================================
ERROR: test_preconditioner (__main__.TestPyAMGCL.test_preconditioner)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/tests/test_pyamgcl.py", line 64,
in test_preconditioner
x,info = bicgstab(A, rhs, M=P, tol=1e-3)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
TypeError: bicgstab() got an unexpected keyword argument 'tol'
----------------------------------------------------------------------
Ran 2 tests in 0.990s
FAILED (errors=1)
12: Iterations: 21
12: Error: 8.14557e-09
12:
12: Coarsening: aggregation
12: Number of levels: 4
12: Operator complexity: 1.25
12: Grid complexity: 1.15
12: Memory footprint: 8.31 M
12:
12: level unknowns nonzeros memory
12: ---------------------------------------------
12: 0 32768 223232 5.28 M (80.02%)
12: 1 4192 46254 2.47 M (16.58%)
12: 2 593 8329 428.00 K ( 2.99%)
12: 3 90 1170 141.52 K ( 0.42%)
12:
12: Iterations: 48
12: Error: 9.3368e-09
12:
12: Number of levels: 4
12: Operator complexity: 1.25
12: Grid complexity: 1.15
12: Memory footprint: 8.31 M
12:
12: level unknowns nonzeros memory
12: ---------------------------------------------
12: 0 32768 223232 5.28 M (80.02%)
12: 1 4192 46254 2.47 M (16.58%)
12: 2 593 8329 428.00 K ( 2.99%)
12: 3 90 1170 141.52 K ( 0.42%)
12:
12: Iterations: 48
12: Error: 9.3368e-09
12:
12: Coarsening: smoothed_aggregation
12: Number of levels: 3
12: Operator complexity: 1.59
12: Grid complexity: 1.14
12: Memory footprint: 20.02 M
12:
12: level unknowns nonzeros memory
12: ---------------------------------------------
12: 0 32768 223232 11.65 M (62.80%)
12: 1 4192 114356 6.13 M (32.17%)
12: 2 346 17898 2.24 M ( 5.03%)
12:
12: Iterations: 19
12: Error: 5.58503e-09
12:
12: Number of levels: 3
12: Operator complexity: 1.59
12: Grid complexity: 1.14
12: Memory footprint: 20.02 M
12:
12: level unknowns nonzeros memory
12: ---------------------------------------------
12: 0 32768 223232 11.65 M (62.80%)
12: 1 4192 114356 6.13 M (32.17%)
12: 2 346 17898 2.24 M ( 5.03%)
12:
12: Iterations: 19
12: Error: 5.58503e-09
12:
12: Coarsening: smoothed_aggr_emin
12: Number of levels: 3
12: Operator complexity: 1.60
12: Grid complexity: 1.14
12: Memory footprint: 20.33 M
12:
12: level unknowns nonzeros memory
12: ---------------------------------------------
12: 0 32768 223232 11.65 M (62.57%)
12: 1 4192 114356 6.13 M (32.05%)
12: 2 372 19190 2.56 M ( 5.38%)
12:
12: Iterations: 19
12: Error: 4.23987e-09
12:
12: Number of levels: 3
12: Operator complexity: 1.60
12: Grid complexity: 1.14
12: Memory footprint: 20.33 M
12:
12: level unknowns nonzeros memory
12: ---------------------------------------------
12: 0 32768 223232 11.65 M (62.57%)
12: 1 4192 114356 6.13 M (32.05%)
12: 2 372 19190 2.56 M ( 5.38%)
12:
12: Iterations: 19
12: Error: 4.23987e-09
12:
12: Coarsening: ruge_stuben
12: Solver: cg
12: Number of levels: 1
12: Operator complexity: 1.00
12: Grid complexity: 1.00
12: Memory footprint: 148.00 B
12:
12: level unknowns nonzeros memory
12: ---------------------------------------------
12: 0 2 2 148.00 B (100.00%)
12:
12: Iterations: 1
12: Error: 0
12:
12: Solver: bicgstab
12: Number of levels: 1
12: Operator complexity: 1.00
12: Grid complexity: 1.00
12: Memory footprint: 148.00 B
12:
12: level unknowns nonzeros memory
12: ---------------------------------------------
12: 0 2 2 148.00 B (100.00%)
12:
12: Iterations: 1
12: Error: 0
12:
12: Solver: bicgstabl
12: Number of levels: 1
12: Operator complexity: 1.00
12: Grid complexity: 1.00
12: Memory footprint: 148.00 B
12:
12: level unknowns nonzeros memory
12: ---------------------------------------------
12: 0 2 2 148.00 B (100.00%)
12:
12: Iterations: 1
12: Error: 0
12:
12: Solver: gmres
12: Number of levels: 1
12: Operator complexity: 1.00
12: Grid complexity: 1.00
12: Memory footprint: 148.00 B
12:
12: level unknowns nonzeros memory
12: ---------------------------------------------
12: 0 2 2 148.00 B (100.00%)
12:
12: Iterations: 1
12: Error: 2.22045e-16
12:
12: Solver: lgmres
12: Number of levels: 1
12: Operator complexity: 1.00
12: Grid complexity: 1.00
12: Memory footprint: 148.00 B
12:
12: level unknowns nonzeros memory
12: ---------------------------------------------
12: 0 2 2 148.00 B (100.00%)
12:
12: Iterations: 1
12: Error: 2.22045e-16
12:
12: Solver: fgmres
12: Number of levels: 1
12: Operator complexity: 1.00
12: Grid complexity: 1.00
12: Memory footprint: 148.00 B
12:
12: level unknowns nonzeros memory
12: ---------------------------------------------
12: 0 2 2 148.00 B (100.00%)
12:
12: Iterations: 1
12: Error: 2.22045e-16
12:
12: Solver: idrs
12: Number of levels: 1
12: Operator complexity: 1.00
12: Grid complexity: 1.00
12: Memory footprint: 148.00 B
12:
12: level unknowns nonzeros memory
12: ---------------------------------------------
12: 0 2 2 148.00 B (100.00%)
12:
12: Iterations: 0
12: Error: 0
12:
12: Relaxation: spai0
12: Number of levels: 1
12: Operator complexity: 1.00
12: Grid complexity: 1.00
12: Memory footprint: 148.00 B
12:
12: level unknowns nonzeros memory
12: ---------------------------------------------
12: 0 2 2 148.00 B (100.00%)
12:
12: Iterations: 1
12: Error: 0
12:
12: Relaxation as preconditioner: spai0
12: Using spai0 as preconditioner
12: Iterations: 1
12: Error: 0
12:
12: Relaxation: spai1
12: Number of levels: 1
12: Operator complexity: 1.00
12: Grid complexity: 1.00
12: Memory footprint: 148.00 B
12:
12: level unknowns nonzeros memory
12: ---------------------------------------------
12: 0 2 2 148.00 B (100.00%)
12:
12: Iterations: 1
12: Error: 0
12:
12: Relaxation as preconditioner: spai1
12: Relaxation: damped_jacobi
12: Number of levels: 1
12: Operator complexity: 1.00
12: Grid complexity: 1.00
12: Memory footprint: 148.00 B
12:
12: level unknowns nonzeros memory
12: ---------------------------------------------
12: 0 2 2 148.00 B (100.00%)
12:
12: Iterations: 1
12: Error: 0
12:
12: Relaxation as preconditioner: damped_jacobi
12: Using damped_jacobi as preconditioner
12: Iterations: 1
12: Error: 0
12:
12: Relaxation: gauss_seidel
12: Number of levels: 1
12: Operator complexity: 1.00
12: Grid complexity: 1.00
12: Memory footprint: 148.00 B
12:
12: level unknowns nonzeros memory
12: ---------------------------------------------
12: 0 2 2 148.00 B (100.00%)
12:
12: Iterations: 1
12: Error: 0
12:
12: Relaxation as preconditioner: gauss_seidel
12: Using gauss_seidel as preconditioner
12: Iterations: 1
12: Error: 0
12:
12: Relaxation: ilu0
12: Number of levels: 1
12: Operator complexity: 1.00
12: Grid complexity: 1.00
12: Memory footprint: 148.00 B
12:
12: level unknowns nonzeros memory
12: ---------------------------------------------
12: 0 2 2 148.00 B (100.00%)
12:
12: Iterations: 1
12: Error: 0
12:
12: Relaxation as preconditioner: ilu0
12: Using ilu0 as preconditioner
12: Iterations: 1
12: Error: 0
12:
12: Relaxation: iluk
12: Number of levels: 1
12: Operator complexity: 1.00
12: Grid complexity: 1.00
12: Memory footprint: 148.00 B
12:
12: level unknowns nonzeros memory
12: ---------------------------------------------
12: 0 2 2 148.00 B (100.00%)
12:
12: Iterations: 1
12: Error: 0
12:
12: Relaxation as preconditioner: iluk
12: Using iluk as preconditioner
12: Iterations: 1
12: Error: 0
12:
12: Relaxation: ilup
12: Number of levels: 1
12: Operator complexity: 1.00
12: Grid complexity: 1.00
12: Memory footprint: 148.00 B
12:
12: level unknowns nonzeros memory
12: ---------------------------------------------
12: 0 2 2 148.00 B (100.00%)
12:
12: Iterations: 1
12: Error: 0
12:
12: Relaxation as preconditioner: ilup
12: Using ilup as preconditioner
12: Iterations: 1
12: Error: 0
12:
12: Relaxation: ilut
12: Number of levels: 1
12: Operator complexity: 1.00
12: Grid complexity: 1.00
12: Memory footprint: 148.00 B
12:
12: level unknowns nonzeros memory
12: ---------------------------------------------
12: 0 2 2 148.00 B (100.00%)
12:
12: Iterations: 1
12: Error: 0
12:
12: Relaxation as preconditioner: ilut
12: Using ilut as preconditioner
12: Iterations: 1
12: Error: 0
12:
12: Relaxation: chebyshev
12: Number of levels: 1
12: Operator complexity: 1.00
12: Grid complexity: 1.00
12: Memory footprint: 148.00 B
12:
12: level unknowns nonzeros memory
12: ---------------------------------------------
12: 0 2 2 148.00 B (100.00%)
12:
12: Iterations: 1
12: Error: 0
12:
12: Relaxation as preconditioner: chebyshev
12: Using chebyshev as preconditioner
12: Iterations: 1
12: Error: 0
12:
12: Coarsening: aggregation
12: Number of levels: 1
12: Operator complexity: 1.00
12: Grid complexity: 1.00
12: Memory footprint: 148.00 B
12:
12: level unknowns nonzeros memory
12: ---------------------------------------------
12: 0 2 2 148.00 B (100.00%)
12:
12: Iterations: 1
12: Error: 0
12:
12: Number of levels: 1
12: Operator complexity: 1.00
12: Grid complexity: 1.00
12: Memory footprint: 148.00 B
12:
12: level unknowns nonzeros memory
12: ---------------------------------------------
12: 0 2 2 148.00 B (100.00%)
12:
12: Iterations: 1
12: Error: 0
12:
12: Coarsening: smoothed_aggregation
12: Number of levels: 1
12: Operator complexity: 1.00
12: Grid complexity: 1.00
12: Memory footprint: 148.00 B
12:
12: level unknowns nonzeros memory
12: ---------------------------------------------
12: 0 2 2 148.00 B (100.00%)
12:
12: Iterations: 1
12: Error: 0
12:
12: Number of levels: 1
12: Operator complexity: 1.00
12: Grid complexity: 1.00
12: Memory footprint: 148.00 B
12:
12: level unknowns nonzeros memory
12: ---------------------------------------------
12: 0 2 2 148.00 B (100.00%)
12:
12: Iterations: 1
12: Error: 0
12:
12: Coarsening: smoothed_aggr_emin
12: Number of levels: 1
12: Operator complexity: 1.00
12: Grid complexity: 1.00
12: Memory footprint: 148.00 B
12:
12: level unknowns nonzeros memory
12: ---------------------------------------------
12: 0 2 2 148.00 B (100.00%)
12:
12: Iterations: 1
12: Error: 0
12:
12: Number of levels: 1
12: Operator complexity: 1.00
12: Grid complexity: 1.00
12: Memory footprint: 148.00 B
12:
12: level unknowns nonzeros memory
12: ---------------------------------------------
12: 0 2 2 148.00 B (100.00%)
12:
12: Iterations: 1
12: Error: 0
12:
12: Coarsening: ruge_stuben
12:
12: [1;32;49m*** No errors detected
12: [0;39;49m
13/13 Test #12: test_solver_ns_eigen ............. Passed 62.55 sec
92% tests passed, 1 tests failed out of 13
Total Test time (real) = 308.97 sec
The following tests FAILED:
13 - test_pyamgcl (Failed)
Errors while running CTest
make[1]: *** [Makefile:74: test] Error 8
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
dh_auto_test: error: cd obj-x86_64-linux-gnu && make -j2 test ARGS\+=--verbose
ARGS\+=-j2 returned exit code 2
make: *** [debian/rules:8: build] Error 25
dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2
--------------------------------------------------------------------------------
The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202412/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and affects, so that this is still visible in the BTS web
page for this package.
Thanks.
--- End Message ---
--- Begin Message ---
Source: amgcl
Source-Version: 1.4.4-1
Done: Dima Kogan <dko...@debian.org>
We believe that the bug you reported is fixed in the latest version of
amgcl, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1090...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Dima Kogan <dko...@debian.org> (supplier of updated amgcl package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 13 Jan 2025 21:42:55 -0800
Source: amgcl
Binary: libamgcl-dev python3-amgcl
Architecture: source all amd64
Version: 1.4.4-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Dima Kogan <dko...@debian.org>
Description:
libamgcl-dev - Solves large sparse linear systems with algebraic multigrid
metho
python3-amgcl - Solves large sparse linear systems with algebraic multigrid
metho
Closes: 1090190
Changes:
amgcl (1.4.4-1) unstable; urgency=medium
.
* New upstream release
* Fixed build with scipy 1.14 (Closes: #1090190)
Checksums-Sha1:
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amgcl_1.4.4-1_amd64.buildinfo
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amgcl_1.4.4-1.dsc
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amgcl_1.4.4.orig.tar.gz
e96d35a5fc3cd23ba0c654c24894c839 6840 contrib/libdevel optional
amgcl_1.4.4-1.debian.tar.xz
6f128b87e7d0fa67b20bc939d644ae55 12999 contrib/libdevel optional
amgcl_1.4.4-1_amd64.buildinfo
bcd23493fd021acab7d9d1c921329001 2924000 contrib/libdevel optional
libamgcl-dev_1.4.4-1_all.deb
91b0c6130b8d9088dd36fdf33caabc38 230680 contrib/python optional
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