Your message dated Sat, 11 Jan 2025 05:27:52 +0000
with message-id <e1twu2k-002rau...@fasolo.debian.org>
and subject line Bug#1082098: fixed in pynfft 1.3.2-11
has caused the Debian Bug report #1082098,
regarding pynfft FTBFS with Python 3.13
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1082098: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1082098
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: pynfft
Version: 1.3.2-10
Severity: normal
User: debian-pyt...@lists.debian.org
Usertags: python3.13
This package failed build from source when test-built against a version of
python3-defaults that includes 3.13 as a supported version.
To reproduce this issue, build against python3-defaults (python3-all-dev etc.)
from Debian experimental.
In this case, pynfft needs to get off cython3-legacy and build with a
modern cython that can support 3.13.
What's new in Python 3.13:
https://docs.python.org/3.13/whatsnew/3.13.html
Log snippet:
11733 | int ret = _PyLong_AsByteArray((PyLongObject *)v,
| ^~~~~~~~~~~~~~~~~~~
/usr/include/python3.13/cpython/longobject.h:111:17: note: declared here
111 | PyAPI_FUNC(int) _PyLong_AsByteArray(PyLongObject* v,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/pynfft/nfft.c: In function ‘__Pyx_PyInt_As_Py_intptr_t’:
/<<PKGBUILDDIR>>/pynfft/nfft.c:11929:27: error: too few arguments to function
‘_PyLong_AsByteArray’
11929 | int ret = _PyLong_AsByteArray((PyLongObject *)v,
| ^~~~~~~~~~~~~~~~~~~
/usr/include/python3.13/cpython/longobject.h:111:17: note: declared here
111 | PyAPI_FUNC(int) _PyLong_AsByteArray(PyLongObject* v,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/pynfft/nfft.c: In function ‘__Pyx_PyInt_As_unsigned_int’:
/<<PKGBUILDDIR>>/pynfft/nfft.c:12163:27: error: too few arguments to function
‘_PyLong_AsByteArray’
12163 | int ret = _PyLong_AsByteArray((PyLongObject *)v,
| ^~~~~~~~~~~~~~~~~~~
/usr/include/python3.13/cpython/longobject.h:111:17: note: declared here
111 | PyAPI_FUNC(int) _PyLong_AsByteArray(PyLongObject* v,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/pynfft/nfft.c: In function ‘__Pyx_PyInt_As_long’:
/<<PKGBUILDDIR>>/pynfft/nfft.c:12397:27: error: too few arguments to function
‘_PyLong_AsByteArray’
12397 | int ret = _PyLong_AsByteArray((PyLongObject *)v,
| ^~~~~~~~~~~~~~~~~~~
/usr/include/python3.13/cpython/longobject.h:111:17: note: declared here
111 | PyAPI_FUNC(int) _PyLong_AsByteArray(PyLongObject* v,
| ^~~~~~~~~~~~~~~~~~~
error: command '/usr/bin/aarch64-linux-gnu-gcc' failed with exit code 1
E: pybuild pybuild:389: build: plugin distutils failed with: exit code=1:
/usr/bin/python3.13 setup.py build
I: pybuild base:311: /usr/bin/python3 setup.py build
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning:
Unknown distribution option: 'test_suite'
warnings.warn(msg)
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pynfft/build/pynfft
copying pynfft/version.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pynfft/build/pynfft
copying pynfft/__init__.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pynfft/build/pynfft
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pynfft/build/pynfft/tests
copying pynfft/tests/__init__.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pynfft/build/pynfft/tests
copying pynfft/tests/test_nfft.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pynfft/build/pynfft/tests
running build_ext
building 'pynfft.nfft' extension
creating build/temp.linux-aarch64-cpython-312
creating build/temp.linux-aarch64-cpython-312/build
creating build/temp.linux-aarch64-cpython-312/<<BUILDDIR>>
creating build/temp.linux-aarch64-cpython-312/<<PKGBUILDDIR>>
creating build/temp.linux-aarch64-cpython-312/<<PKGBUILDDIR>>/pynfft
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall
-g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security
-mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12
-c /<<PKGBUILDDIR>>/pynfft/nfft.c -o
build/temp.linux-aarch64-cpython-312/<<PKGBUILDDIR>>/pynfft/nfft.o -O3
-fomit-frame-pointer -fstrict-aliasing -ffast-math
In file included from
/usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from
/usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from
/usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from /<<PKGBUILDDIR>>/pynfft/nfft.c:789:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2:
warning: #warning "Using deprecated NumPy API, disable it with " "#define
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g
-fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security
-mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2
build/temp.linux-aarch64-cpython-312/<<PKGBUILDDIR>>/pynfft/nfft.o
-L/usr/lib/aarch64-linux-gnu -lnfft3_threads -lnfft3 -lfftw3_threads -lfftw3
-lm -o
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pynfft/build/pynfft/nfft.cpython-312-aarch64-linux-gnu.so
building 'pynfft.solver' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall
-g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security
-mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12
-c /<<PKGBUILDDIR>>/pynfft/solver.c -o
build/temp.linux-aarch64-cpython-312/<<PKGBUILDDIR>>/pynfft/solver.o -O3
-fomit-frame-pointer -fstrict-aliasing -ffast-math
In file included from
/usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from
/usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from
/usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from /<<PKGBUILDDIR>>/pynfft/solver.c:787:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2:
warning: #warning "Using deprecated NumPy API, disable it with " "#define
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g
-fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security
-mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2
build/temp.linux-aarch64-cpython-312/<<PKGBUILDDIR>>/pynfft/solver.o
-L/usr/lib/aarch64-linux-gnu -lnfft3_threads -lnfft3 -lfftw3_threads -lfftw3
-lm -o
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pynfft/build/pynfft/solver.cpython-312-aarch64-linux-gnu.so
building 'pynfft.util' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall
-g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security
-mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12
-c /<<PKGBUILDDIR>>/pynfft/util.c -o
build/temp.linux-aarch64-cpython-312/<<PKGBUILDDIR>>/pynfft/util.o -O3
-fomit-frame-pointer -fstrict-aliasing -ffast-math
In file included from
/usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from
/usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from
/usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from /<<PKGBUILDDIR>>/pynfft/util.c:787:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2:
warning: #warning "Using deprecated NumPy API, disable it with " "#define
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g
-fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security
-mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2
build/temp.linux-aarch64-cpython-312/<<PKGBUILDDIR>>/pynfft/util.o
-L/usr/lib/aarch64-linux-gnu -lnfft3_threads -lnfft3 -lfftw3_threads -lfftw3
-lm -o
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pynfft/build/pynfft/util.cpython-312-aarch64-linux-gnu.so
dh_auto_build: error: pybuild --build -i python{version} -p "3.13 3.12"
returned exit code 13
make: *** [debian/rules:9: binary-arch] Error 25
dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit
status 2
--------------------------------------------------------------------------------
Build finished at 2024-09-18T08:33:40Z
If required, the full build log is available here (for the next 30 days):
https://debusine.debian.net/artifact/775269/
This bug has been filed at "normal" severity, as we haven't started the
transition to add 3.13 as a supported version, yet. This will be raised to RC
as soon as that happens, hopefully well before trixie.
Thanks,
Stefano
--- End Message ---
--- Begin Message ---
Source: pynfft
Source-Version: 1.3.2-11
Done: Stuart Prescott <stu...@debian.org>
We believe that the bug you reported is fixed in the latest version of
pynfft, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1082...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Stuart Prescott <stu...@debian.org> (supplier of updated pynfft package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sat, 11 Jan 2025 16:08:28 +1100
Source: pynfft
Architecture: source
Version: 1.3.2-11
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Stuart Prescott <stu...@debian.org>
Closes: 1082098
Changes:
pynfft (1.3.2-11) unstable; urgency=medium
.
* Team upload
* Add patch for newer cython and Python 3.13 (Closes: #1082098).
* Add build-dependency on python3-zombie-imp.
* Add patch to update 'yield' tests for pytest so that they run again.
* Fix homepage URL.
* Update Standards-Version to 4.7.0 (no changes required).
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0d07784241baaff0a145191e5d01817730f7c5cf 6496 pynfft_1.3.2-11.debian.tar.xz
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Checksums-Sha256:
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Files:
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5031924456df123f5435dc5a99617a16 6496 science optional
pynfft_1.3.2-11.debian.tar.xz
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pynfft_1.3.2-11_amd64.buildinfo
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