Your message dated Fri, 13 Dec 2024 15:49:58 +0000
with message-id <e1tm7vs-003hlf...@fasolo.debian.org>
and subject line Bug#1075288: fixed in mosdepth 0.3.10+ds-1
has caused the Debian Bug report #1075288,
regarding mosdepth: ftbfs with GCC-14
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
1075288: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1075288
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:mosdepth
Version: 0.3.6+ds-1
Severity: important
Tags: sid trixie
User: debian-...@lists.debian.org
Usertags: ftbfs-gcc-14
[This bug is targeted to the upcoming trixie release]
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-14/g++-14, but succeeds to build with gcc-13/g++-13. The
severity of this report will be raised before the trixie release.
The full build log can be found at:
http://qa-logs.debian.net/2024/07/01/mosdepth_0.3.6+ds-1_unstable_gccexp.log
The last lines of the build log are at the end of this report.
To build with GCC 14, either set CC=gcc-14 CXX=g++-14 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-14/porting_to.html
[...]
/<<PKGBUILDDIR>>/mosdepth.nim(262, 18) template/generic instantiation of `tag`
from here
/usr/share/nimble/hts/hts/bam/auxtags.nim(66, 7) Warning: unreachable code
after 'return' statement or '{.noReturn.}' proc [UnreachableCode]
/<<PKGBUILDDIR>>/mosdepth.nim(262, 18) template/generic instantiation of `tag`
from here
/usr/share/nimble/hts/hts/bam/auxtags.nim(74, 7) Warning: unreachable code
after 'return' statement or '{.noReturn.}' proc [UnreachableCode]
/<<PKGBUILDDIR>>/mosdepth.nim(606, 15) Warning: open; wopen_bgzi is deprecated
[Deprecated]
/<<PKGBUILDDIR>>/mosdepth.nim(609, 17) Warning: open; wopen_bgzi is deprecated
[Deprecated]
/<<PKGBUILDDIR>>/mosdepth.nim(612, 19) Warning: open; wopen_bgzi is deprecated
[Deprecated]
/<<PKGBUILDDIR>>/mosdepth.nim(625, 15) Warning: open; wopen_bgzi is deprecated
[Deprecated]
/<<PKGBUILDDIR>>/mosdepth.nim(879, 13) Warning: implicit conversion to
'cstring' from a non-const location: $args["<BAM-or-CRAM>"]; this will become a
compile time error in the future [CStringConv]
/<<PKGBUILDDIR>>/mosdepth.nim(543, 6) Hint: 'to_tuples' is declared but not
used [XDeclaredButNotUsed]
/<<PKGBUILDDIR>>/mosdepth.nim(9, 8) Warning: imported and not used: 'strformat'
[UnusedImport]
/<<PKGBUILDDIR>>/mosdepth.nim(11, 8) Warning: imported and not used: 'times'
[UnusedImport]
CC: ../../../usr/lib/nim/lib/std/private/digitsutils.nim
CC: ../../../usr/lib/nim/lib/system/assertions.nim
CC: ../../../usr/lib/nim/lib/system/dollars.nim
CC: ../../../usr/lib/nim/lib/system/io.nim
CC: ../../../usr/lib/nim/lib/system.nim
CC: ../../../usr/share/nimble/hts/hts/private/hts_concat.nim
CC: ../../../usr/lib/nim/lib/pure/parseutils.nim
CC: ../../../usr/lib/nim/lib/pure/unicode.nim
CC: ../../../usr/lib/nim/lib/pure/math.nim
CC: ../../../usr/lib/nim/lib/pure/algorithm.nim
CC: ../../../usr/lib/nim/lib/pure/strutils.nim
CC: ../../../usr/lib/nim/lib/pure/strformat.nim
CC: ../../../usr/share/nimble/hts/hts/bam.nim
CC: ../../../usr/lib/nim/lib/pure/collections/sequtils.nim
CC: ../../../usr/share/nimble/hts/hts/vcf.nim
CC: ../../../usr/share/nimble/hts/hts/bgzf.nim
CC: ../../../usr/share/nimble/hts/hts/csi.nim
CC: ../../../usr/share/nimble/hts/hts/bgzf/bgzi.nim
CC: ../../../usr/share/nimble/hts/hts.nim
CC: ../../../usr/lib/nim/lib/pure/hashes.nim
CC: ../../../usr/lib/nim/lib/pure/collections/tables.nim
CC: int2str.nim
CC: ../../../usr/lib/nim/lib/pure/times.nim
CC: ../../../usr/lib/nim/lib/pure/os.nim
CC: ../../../usr/lib/nim/lib/pure/collections/sets.nim
CC: ../../../usr/share/nimble/unicodedb/unicodedb/properties_data.nim
CC: ../../../usr/share/nimble/unicodedb/unicodedb/properties.nim
CC: ../../../usr/share/nimble/regex/regex/common.nim
CC: ../../../usr/share/nimble/regex/regex/nodetype.nim
CC: ../../../usr/share/nimble/regex/regex/exptransformation.nim
CC: ../../../usr/share/nimble/regex/regex/nfa.nim
CC: ../../../usr/share/nimble/unicodedb/unicodedb/types_data.nim
CC: ../../../usr/share/nimble/unicodedb/unicodedb/types.nim
CC: ../../../usr/share/nimble/unicodeplus/unicodeplus.nim
CC: ../../../usr/share/nimble/regex/regex/nodematch.nim
CC: ../../../usr/share/nimble/regex/regex/litopt.nim
CC: ../../../usr/share/nimble/regex/regex/nfatype.nim
CC: ../../../usr/share/nimble/regex/regex/nfafindall.nim
CC: ../../../usr/share/nimble/regex/regex/nfamatch.nim
CC: ../../../usr/share/nimble/docopt/docopt/util.nim
CC: ../../../usr/share/nimble/docopt/docopt.nim
CC: depthstat.nim
CC: mosdepth.nim
/<<PKGBUILDDIR>>/nimcache/@m..@s..@s..@susr@sshare@snimble@sdoc...@sdocopt.nim.c:
In function ‘single_match__OOZOOZOOZusrZshareZnimbleZdocoptZdocopt_1666’:
/<<PKGBUILDDIR>>/nimcache/@m..@s..@s..@susr@sshare@snimble@sdoc...@sdocopt.nim.c:4784:53:
error: assignment to ‘tyObject_PatterncolonObjectType___UMJteYlHaV5TEraRE0vAsg
*’ from incompatible pointer type
‘tyObject_ArgumentcolonObjectType___DhRoYbiBcyoxV4IeXTvZYQ *’
[-Wincompatible-pointer-types]
4784 | colontmp__2 =
argument__OOZOOZOOZusrZshareZnimbleZdocoptZdocopt_239(T10_, (*pattern).value);
| ^
/<<PKGBUILDDIR>>/nimcache/@m..@s..@s..@susr@sshare@snimble@sdoc...@sdocopt.nim.c:
In function ‘single_match__OOZOOZOOZusrZshareZnimbleZdocoptZdocopt_1684’:
/<<PKGBUILDDIR>>/nimcache/@m..@s..@s..@susr@sshare@snimble@sdoc...@sdocopt.nim.c:4920:61:
error: assignment to ‘tyObject_PatterncolonObjectType___UMJteYlHaV5TEraRE0vAsg
*’ from incompatible pointer type
‘tyObject_CommandcolonObjectType___DxK0NjB3YmW64E9b9bi0erBQ *’
[-Wincompatible-pointer-types]
4920 | colontmp__2 =
command__OOZOOZOOZusrZshareZnimbleZdocoptZdocopt_269(T18_, T19_);
| ^
Error: execution of an external compiler program 'gcc -c -w -fmax-errors=3 -g3
-Og -O3 -fno-strict-aliasing -fno-ident -I/usr/lib/nim/lib -I/<<PKGBUILDDIR>>
-o
/<<PKGBUILDDIR>>/nimcache/@m..@s..@s..@susr@sshare@snimble@sdoc...@sdocopt.nim.c.o
/<<PKGBUILDDIR>>/nimcache/@m..@s..@s..@susr@sshare@snimble@sdoc...@sdocopt.nim.c'
failed with exit code: 1
make[1]: *** [debian/rules:14: override_dh_auto_build] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:11: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--- End Message ---
--- Begin Message ---
Source: mosdepth
Source-Version: 0.3.10+ds-1
Done: Andreas Tille <ti...@debian.org>
We believe that the bug you reported is fixed in the latest version of
mosdepth, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1075...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated mosdepth package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 13 Dec 2024 16:22:43 +0100
Source: mosdepth
Architecture: source
Version: 0.3.10+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Closes: 1075288
Changes:
mosdepth (0.3.10+ds-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
* Standards-Version: 4.7.0 (routine-update)
* Tolerate incompatible pointer types to build smoothly
Closes: #1075288
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mosdepth_0.3.10+ds-1.debian.tar.xz
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mosdepth_0.3.10+ds-1_amd64.buildinfo
Checksums-Sha256:
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mosdepth_0.3.10+ds-1_amd64.buildinfo
Files:
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c0af4a9cf5a538e9826e614ac5958303 25548 science optional
mosdepth_0.3.10+ds.orig.tar.xz
9d282502e4e9a33b3085c4440b005769 716532 science optional
mosdepth_0.3.10+ds-1.debian.tar.xz
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mosdepth_0.3.10+ds-1_amd64.buildinfo
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--- End Message ---
