Your message dated Tue, 10 Dec 2024 22:25:41 +0000
with message-id <z1i_5yeicug_u...@riva.ucam.org>
and subject line Re: Bug#1088754: nabu: autopkgtest failure with Python 3.13
has caused the Debian Bug report #1088754,
regarding nabu: autopkgtest failure with Python 3.13
to be marked as done.
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--
1088754: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1088754
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: nabu
Version: 2024.1.9-3
Severity: serious
User: debian-pyt...@lists.debian.org
Usertags: python3.13
Hi Maintainer
The autopkgtests of this package fail with Python 3.13 [1]. I've
copied what I hope is the relevant part of the log below.
Regards
Graham
[1] https://ci.debian.net/packages/n/nabu/testing/amd64/
138s ==================================== ERRORS
====================================
138s _____________ ERROR collecting app/tests/test_reduce_dark_flat.py
______________
138s ImportError while importing test module
'/usr/lib/python3/dist-packages/nabu/app/tests/test_reduce_dark_flat.py'.
138s Hint: make sure your test modules/packages have valid Python names.
138s Traceback:
138s /usr/lib/python3/dist-packages/h5py/__init__.py:24: in <module>
138s from . import _debian_h5py_serial as _h5py
138s /usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py:25:
in <module>
138s from . import _errors
138s E ImportError: cannot import name '_errors' from partially
initialized module 'h5py._debian_h5py_serial' (most likely due to a
circular import)
(/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py)
138s
138s During handling of the above exception, another exception occurred:
138s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
138s return _bootstrap._gcd_import(name[level:], package, level)
138s /usr/lib/python3/dist-packages/nabu/app/tests/test_reduce_dark_flat.py:3:
in <module>
138s from nabu.app.reduce_dark_flat import reduce_dark_flat
138s /usr/lib/python3/dist-packages/nabu/app/reduce_dark_flat.py:11: in <module>
138s from tomoscan.scanbase import TomoScanBase
138s /usr/lib/python3/dist-packages/tomoscan/scanbase.py:41: in <module>
138s import h5py
138s /usr/lib/python3/dist-packages/h5py/__init__.py:26: in <module>
138s from . import _debian_h5py_mpi as _h5py
138s E ImportError: cannot import name '_debian_h5py_mpi' from
partially initialized module 'h5py' (most likely due to a circular
import) (/usr/lib/python3/dist-packages/h5py/__init__.py)
--- End Message ---
--- Begin Message ---
On Sat, Nov 30, 2024 at 03:43:01PM +0000, Graham Inggs wrote:
> Source: nabu
> Version: 2024.1.9-3
> Severity: serious
> User: debian-pyt...@lists.debian.org
> Usertags: python3.13
>
> Hi Maintainer
>
> The autopkgtests of this package fail with Python 3.13 [1]. I've
> copied what I hope is the relevant part of the log below.
>
> Regards
> Graham
>
>
> [1] https://ci.debian.net/packages/n/nabu/testing/amd64/
>
>
> 138s ==================================== ERRORS
> ====================================
> 138s _____________ ERROR collecting app/tests/test_reduce_dark_flat.py
> ______________
> 138s ImportError while importing test module
> '/usr/lib/python3/dist-packages/nabu/app/tests/test_reduce_dark_flat.py'.
> 138s Hint: make sure your test modules/packages have valid Python names.
> 138s Traceback:
> 138s /usr/lib/python3/dist-packages/h5py/__init__.py:24: in <module>
> 138s from . import _debian_h5py_serial as _h5py
> 138s /usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py:25:
> in <module>
> 138s from . import _errors
> 138s E ImportError: cannot import name '_errors' from partially
> initialized module 'h5py._debian_h5py_serial' (most likely due to a
> circular import)
> (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py)
I think this was an h5py issue or something to do with the openmpi
transition, rather than a bug in nabu as such.
https://ci.debian.net/packages/n/nabu/testing/amd64/ shows that a later
test with python3-defaults/3.12.7-1 passed
(https://ci.debian.net/packages/n/nabu/testing/amd64/55067517/).
--
Colin Watson (he/him) [cjwat...@debian.org]
--- End Message ---
