Your message dated Tue, 26 Nov 2024 23:19:48 +0000
with message-id <e1tg4qs-008bbo...@fasolo.debian.org>
and subject line Bug#1086226: fixed in rdkit 202409.2-1
has caused the Debian Bug report #1086226,
regarding rdkit: autopkgtests fail
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1086226: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1086226
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: rdkit
Version: 202209.3-1
Severity: serious
Hi,
Your autopkgtests are failing, preventing migration to testing. This is an
excerpt from the log:
97s autopkgtest [04:13:35]: test installcheck: [-----------------------
98s ### PostgreSQL 17 installcheck ###
98s Creating new PostgreSQL cluster 17/regress ...
101s make: Entering directory
'/tmp/autopkgtest-lxc.6b55e4gh/downtmp/build.O2c/src/Code/PgSQL/rdkit'
101s echo "# +++ regress install-check in +++" &&
/usr/lib/postgresql/17/lib/pgxs/src/makefiles/../../src/test/regress/pg_regress
--inputdir=/tmp/autopkgtest-lxc.6b55e4gh/downtmp/build.O2c/src
--bindir='/usr/lib/postgresql/17/bin' --dbname=contrib_regression rdkit-91
props btree molgist bfpgist-91 bfpgin sfpgist slfpgist fps reaction fmcs query
xqm
101s # +++ regress install-check in +++
101s # using postmaster on localhost, port 5433
101s not ok 1 - rdkit-91 98 ms
101s not ok 2 - props 39 ms
101s not ok 3 - btree 33 ms
101s not ok 4 - molgist 30 ms
101s not ok 5 - bfpgist-91 25 ms
101s not ok 6 - bfpgin 33 ms
102s not ok 7 - sfpgist 33 ms
102s not ok 8 - slfpgist 31 ms
102s not ok 9 - fps 35 ms
102s not ok 10 - reaction 42 ms
102s not ok 11 - fmcs 28 ms
102s not ok 12 - query 32 ms
102s # 13 of 13 tests failed.
Full log for amd64 in
https://ci.debian.net/packages/r/rdkit/testing/amd64/53706492/
Also see:
https://tracker.debian.org/pkg/rdkit
https://ci.debian.net/packages/r/rdkit/
Cheers,
Emilio
--- End Message ---
--- Begin Message ---
Source: rdkit
Source-Version: 202409.2-1
Done: Michael Banck <mba...@debian.org>
We believe that the bug you reported is fixed in the latest version of
rdkit, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1086...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael Banck <mba...@debian.org> (supplier of updated rdkit package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 26 Nov 2024 22:46:44 +0100
Source: rdkit
Architecture: source
Version: 202409.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Michael Banck <mba...@debian.org>
Closes: 1069873 1077055 1086226
Changes:
rdkit (202409.2-1) unstable; urgency=medium
.
* New upstream release.
* debian/patches/NoDownloads.patch: Updated.
* debian/patches/sphinx_imgconverter.patch: Likewise.
* debian/patches/sphinx_compile_fixes.patch: Likewise.
* debian/patches/pg16: Removed, no longer needed.
* debian/control.in, debian/control (Build-Depends): Added
libboost-numpy-dev and python3-pytest.
* debian/patches/disable_pgsql_test.patch: New patch, disables the Postgres
regression test as no Postgres server is supposed to be running during
package build and the Postgres extension is tested via autopkgtest.
* debian/patches/fix_inchi_linking.patch: New patch, fixes linking of
libRDKitRDInchiLib with libinchi (Closes: #1077055).
* debian/patches/disable_inchi_test.patch: New patch, disables the INCHI test
as it times out.
* debian/control.in, debian/control: Revert back to postgresql-PGVERSION.
* debian/rules (override_dh_auto_clean): Remove Postgres build directories.
* debian/rules: Switch to building Postgres extension via cmake. (Closes:
#1086226).
* debian/patches/postgres_cmakelists_fixes.patch: New patch, makes the
Postgres extension CMakefile usable directly.
* debian/rules (override_dh_auto_build): Re-enable latex documentation build
(Closes: #1069873).
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Files:
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--- End Message ---
