Your message dated Sat, 16 Nov 2024 09:37:49 +0000
with message-id <e1tcffv-007wgb...@fasolo.debian.org>
and subject line Bug#1086209: fixed in openmpi 5.0.5-6
has caused the Debian Bug report #1086209,
regarding prime-phylo:FTBFS:build failure (Imported target "MPI::MPI_Fortran"
includes non-existent path )
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
1086209: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1086209
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: prime-phylo
Version: 1.0.11-13
Severity: serious
Tags: FTBFS, patch
User: debian-ri...@lists.debian.org
Usertags: riscv64
X-Debbugs-Cc: debian-ri...@lists.debian.org
Dear prime-phylo Maintainer,
The package prime-phylo build failed on all architectures except amd64. The
crucial buildd log below:
```
-- Found MPI_C: /usr/lib/riscv64-linux-gnu/openmpi/lib/libmpi.so
(found version "3.1")
-- Found MPI_CXX: /usr/lib/riscv64-linux-gnu/openmpi/lib/libmpi.so
(found version "3.1")
CMake Error in
/<<PKGBUILDDIR>>/obj-riscv64-linux-gnu/CMakeFiles/CMakeScratch/TryCompile-RHCg58/CMakeLists.txt:
Imported target "MPI::MPI_Fortran" includes non-existent path
"/usr/lib/x86_64-linux-gnu/fortran/gfortran-mod-15/openmpi"
in its INTERFACE_INCLUDE_DIRECTORIES. Possible reasons include:
* The path was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and references files it does not
provide.
CMake Error at /usr/share/cmake-3.30/Modules/FindMPI.cmake:1282 (try_compile):
Failed to generate test project build system.
Call Stack (most recent call first):
/usr/share/cmake-3.30/Modules/FindMPI.cmake:1301 (_MPI_try_staged_settings)
/usr/share/cmake-3.30/Modules/FindMPI.cmake:1649 (_MPI_check_lang_works)
src/cxx/CMakeLists.txt:19 (find_package)
```
The full buildd log is here:
https://buildd.debian.org/status/fetch.php?pkg=prime-phylo&arch=riscv64&ver=1.0.11-13&stamp=1730649664&raw=0
My solution to this issue:
The configure failed because MPIFORTRAN was not set to the correct path.
My solution is to properly set the path of MPIFORTRAN in the CMakeLists
based on the current architecture. I have tested this method, and it is
very effective. The debpatch is in the attachment. This patch can
automatically set MPIFORTRAN to the correct path based on the current
architecture. Please let me know whether this solution can be accepted.
Gui-Yue
Best Regards
fix_prime-phylo_configure_failed.patch
Description: Binary data
--- End Message ---
--- Begin Message ---
Source: openmpi
Source-Version: 5.0.5-6
Done: Alastair McKinstry <mckins...@debian.org>
We believe that the bug you reported is fixed in the latest version of
openmpi, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1086...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Alastair McKinstry <mckins...@debian.org> (supplier of updated openmpi package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sat, 16 Nov 2024 06:29:12 +0000
Source: openmpi
Architecture: source
Version: 5.0.5-6
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Alastair McKinstry <mckins...@debian.org>
Closes: 1085509 1086209 10870100
Changes:
openmpi (5.0.5-6) unstable; urgency=medium
.
* libmca_* not shipped; delete broken symlinks
* Fix other broken symlinks: docs,etc
* Correct paths in mpi wrappers. Closes: #1086209, #10870100
* Update d/tests/* for pkgconf tests
* Drop rpath from libs. Closes: #1085509
* Update README.Debian
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Files:
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