Your message dated Fri, 08 Nov 2024 10:04:20 +0000
with message-id <e1t9lqm-003zqe...@fasolo.debian.org>
and subject line Bug#1082571: fixed in pymatgen 2024.10.29+dfsg1-1
has caused the Debian Bug report #1082571,
regarding pymatgen: FTBFS: TypeError: 'SpglibDataset' object does not support
item assignment
to be marked as done.
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--
1082571: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1082571
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:pymatgen
Version: 2024.6.10+dfsg1-8
Severity: serious
Tags: ftbfs
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build:
--------------------------------------------------------------------------------
[...]
debian/rules binary
dh binary --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
dh_auto_build -O--buildsystem=pybuild
I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build"
module
I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel
--outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pymatgen
* Building wheel...
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-cpython-312
[... snipped ...]
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=================================== FAILURES ===================================
____________ TestQuasiHarmonicDebyeApprox.test_thermal_conductivity ____________
self =
<tests.analysis.test_quasi_harmonic_debye_approx.TestQuasiHarmonicDebyeApprox
testMethod=test_thermal_conductivity>
def test_thermal_conductivity(self):
kappa = self.qhda.thermal_conductivity(self.T, self.opt_vol)
assert_allclose(kappa, 131.736242, atol=1e-1)
.pybuild/test_python3.12/tests/analysis/test_quasi_harmonic_debye_approx.py:129:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
args = (<function assert_allclose.<locals>.compare at 0x7f51f791afc0>,
array(131.88900754), array(131.736242))
kwds = {'equal_nan': True, 'err_msg': '', 'header': 'Not equal to tolerance
rtol=1e-07, atol=0.1', 'verbose': True}
@wraps(func)
def inner(*args, **kwds):
with self._recreate_cm():
return func(*args, **kwds)
E AssertionError:
E Not equal to tolerance rtol=1e-07, atol=0.1
E
E Mismatched elements: 1 / 1 (100%)
E Max absolute difference: 0.15276554
E Max relative difference: 0.00115963
E x: array(131.889008)
E y: array(131.736242)
/usr/lib/python3.12/contextlib.py:81: AssertionError
----------------------------- Captured stderr call -----------------------------
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264:
DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be
removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264:
DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be
removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264:
DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be
removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264:
DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be
removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264:
DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be
removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264:
DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be
removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264:
DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be
removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264:
DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be
removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264:
DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be
removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264:
DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be
removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264:
DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be
removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264:
DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be
removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264:
DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be
removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264:
DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be
removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264:
DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be
removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264:
DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be
removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264:
DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be
removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264:
DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be
removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264:
DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be
removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264:
DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be
removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264:
DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be
removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:302:
DeprecationWarning:
scipy.misc.derivative is deprecated in SciPy v1.10.0; and will be completely
removed in SciPy v1.12.0. You may consider using findiff:
https://github.com/maroba/findiff or numdifftools:
https://github.com/pbrod/numdifftools
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:303:
DeprecationWarning:
scipy.misc.derivative is deprecated in SciPy v1.10.0; and will be completely
removed in SciPy v1.12.0. You may consider using findiff:
https://github.com/maroba/findiff or numdifftools:
https://github.com/pbrod/numdifftools
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:304:
DeprecationWarning:
scipy.misc.derivative is deprecated in SciPy v1.10.0; and will be completely
removed in SciPy v1.12.0. You may consider using findiff:
https://github.com/maroba/findiff or numdifftools:
https://github.com/pbrod/numdifftools
________________ TestSpacegroupAnalyzer.test_get_crystal_system ________________
self = <tests.symmetry.test_analyzer.TestSpacegroupAnalyzer
testMethod=test_get_crystal_system>
def test_get_crystal_system(self):
crystal_system = self.sg.get_crystal_system()
assert crystal_system == "orthorhombic"
assert self.disordered_sg.get_crystal_system() == "tetragonal"
orig_spg = self.sg._space_group_data["number"]
self.sg._space_group_data["number"] = 0
E TypeError: 'SpglibDataset' object does not support item assignment
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/tests/symmetry/test_analyzer.py:175:
TypeError
----------------------------- Captured stderr call -----------------------------
/usr/lib/python3/dist-packages/spglib/spglib.py:115: DeprecationWarning:
dict interface (SpglibDataset['number']) is deprecated.Use attribute interface
({self.__class__.__name__}.{key}) instead
/usr/lib/python3/dist-packages/spglib/spglib.py:115: DeprecationWarning:
dict interface (SpglibDataset['number']) is deprecated.Use attribute interface
({self.__class__.__name__}.{key}) instead
/usr/lib/python3/dist-packages/spglib/spglib.py:115: DeprecationWarning:
dict interface (SpglibDataset['number']) is deprecated.Use attribute interface
({self.__class__.__name__}.{key}) instead
============================= slowest 30 durations =============================
23.87s call
.pybuild/test_python3.12/tests/electronic_structure/test_plotter.py::TestBSPlotterProjected::test_methods
21.35s call
.pybuild/test_python3.12/tests/ext/test_optimade.py::TestOptimade::test_update_aliases
17.62s call
.pybuild/test_python3.12/tests/analysis/test_fragmenter.py::TestFragmentMolecule::test_pc_then_ec_depth_10
17.58s call
.pybuild/test_python3.12/tests/symmetry/test_kpath_lm.py::TestKPathLatimerMunro::test_kpath_generation
14.85s call
.pybuild/test_python3.12/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_plot
10.67s call
.pybuild/test_python3.12/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_as_from_dict
10.66s call
.pybuild/test_python3.12/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_thermal_conductivity_slack
10.61s call
.pybuild/test_python3.12/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_average_gruneisen
10.61s call
.pybuild/test_python3.12/tests/io/vasp/test_outputs.py::TestVasprun::test_runtype
10.50s call
.pybuild/test_python3.12/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_tdos
10.47s call
.pybuild/test_python3.12/tests/io/test_phonopy.py::TestGruneisen::test_gruneisen_parameter
10.46s call
.pybuild/test_python3.12/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_frequencies
10.40s call
.pybuild/test_python3.12/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_phdos
10.37s call
.pybuild/test_python3.12/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_acoustic_debye_temp
10.35s call
.pybuild/test_python3.12/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_multi
10.20s call
.pybuild/test_python3.12/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_gruneisen
10.09s call
.pybuild/test_python3.12/tests/analysis/elasticity/test_elastic.py::TestElasticTensorExpansion::test_get_yield_stress
10.05s call
.pybuild/test_python3.12/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_debye_temp_phonopy
9.95s call
.pybuild/test_python3.12/tests/analysis/test_structure_analyzer.py::TestMiscFunction::test_average_coordination_number
9.73s call
.pybuild/test_python3.12/tests/io/vasp/test_optics.py::TestVasprun::test_optics
9.55s call
.pybuild/test_python3.12/tests/core/test_surface.py::TestSlabGenerator::test_non_stoichiometric_symmetrized_slab
9.04s call
.pybuild/test_python3.12/tests/symmetry/test_kpath_sc.py::TestBandStructureSC::test_kpath_generation
8.65s call
.pybuild/test_python3.12/tests/analysis/test_prototypes.py::TestAflowPrototypeMatcher::test_prototype_matching
8.10s call
.pybuild/test_python3.12/tests/io/test_packmol.py::TestPackmolSet::test_chdir_behavior
7.72s call
.pybuild/test_python3.12/tests/io/lobster/test_inputs.py::TestFatband::test_attributes
7.28s call
.pybuild/test_python3.12/tests/symmetry/test_groups.py::TestSpaceGroup::test_order_symm_ops
6.71s call
.pybuild/test_python3.12/tests/entries/test_entry_tools.py::TestEntrySet::test_ground_states
6.61s call
.pybuild/test_python3.12/tests/core/test_surface.py::TestSlab::test_symmetrization
6.03s call
.pybuild/test_python3.12/tests/io/lobster/test_lobsterenv.py::TestLobsterNeighbors::test_get_info_cohps_to_neighbors
5.83s call
.pybuild/test_python3.12/tests/core/test_trajectory.py::TestTrajectory::test_extend
=========================== short test summary info ============================
SKIPPED [1] .pybuild/test_python3.12/tests/io/test_openff.py:25: could not
import 'openff.toolkit': No module named 'openff'
SKIPPED [1] .pybuild/test_python3.12/tests/io/test_shengbte.py:11: could not
import 'f90nml': No module named 'f90nml'
SKIPPED [1]
.pybuild/test_python3.12/tests/analysis/magnetism/test_analyzer.py:255: enumlib
not present
SKIPPED [1] .pybuild/test_python3.12/tests/analysis/test_graphs.py:341:
graphviz executables not present
SKIPPED [1] .pybuild/test_python3.12/tests/analysis/test_local_env.py:1333:
critic2 executable not present
SKIPPED [1]
.pybuild/test_python3.12/tests/command_line/test_bader_caller.py:118: bader
executable not present
SKIPPED [1]
.pybuild/test_python3.12/tests/command_line/test_bader_caller.py:86: bader
executable not present
SKIPPED [1]
.pybuild/test_python3.12/tests/command_line/test_bader_caller.py:68: bader
executable not present
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.pybuild/test_python3.12/tests/command_line/test_bader_caller.py:133: bader
executable not present
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.pybuild/test_python3.12/tests/command_line/test_critic2_caller.py:26: critic2
executable not present
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.pybuild/test_python3.12/tests/command_line/test_critic2_caller.py:62: critic2
executable not present
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.pybuild/test_python3.12/tests/command_line/test_enumlib_caller.py:92: enum_lib
not present.
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not present.
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.pybuild/test_python3.12/tests/command_line/test_enumlib_caller.py:122:
enum_lib not present.
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gulp not present.
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gulp not present.
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.pybuild/test_python3.12/tests/command_line/test_gulp_caller.py:169: gulp not
present.
SKIPPED [1]
.pybuild/test_python3.12/tests/command_line/test_gulp_caller.py:142: gulp not
present.
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present.
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.pybuild/test_python3.12/tests/command_line/test_gulp_caller.py:248: gulp not
present.
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present.
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present.
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present.
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present.
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present.
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present.
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present.
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present.
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present.
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present.
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present.
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present.
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present.
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present.
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present.
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present.
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present.
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present.
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present.
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executable not present
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executable not present
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executable not present
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executable not present
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executable not present
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executable not present
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executable not present
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executable not present
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or mcsqs executable not present
SKIPPED [1] .pybuild/test_python3.12/tests/core/test_structure.py:1696: could
not import 'chgnet': No module named 'chgnet'
SKIPPED [1] .pybuild/test_python3.12/tests/core/test_structure.py:1761: TODO
remove skip once https://github.com/materialsvirtuallab/matgl/issues/238 is
resolved
SKIPPED [1] .pybuild/test_python3.12/tests/core/test_structure.py:1673: could
not import 'chgnet': No module named 'chgnet'
SKIPPED [1] .pybuild/test_python3.12/tests/core/test_structure.py:1773: TODO
remove skip once https://github.com/materialsvirtuallab/matgl/issues/238 is
resolved
SKIPPED [1] .pybuild/test_python3.12/tests/core/test_structure.py:1784: TODO
remove skip once https://github.com/materialsvirtuallab/matgl/issues/238 is
resolved
SKIPPED [1] .pybuild/test_python3.12/tests/core/test_structure.py:1793: TODO
remove skip once https://github.com/materialsvirtuallab/matgl/issues/238 is
resolved
SKIPPED [1] .pybuild/test_python3.12/tests/core/test_structure.py:2400: Pytorch
and TBLite clash. https://github.com/materialsproject/pymatgen/pull/3060
SKIPPED [1] .pybuild/test_python3.12/tests/core/test_structure.py:2410: Pytorch
and TBLite clash. https://github.com/materialsproject/pymatgen/pull/3060
SKIPPED [1] .pybuild/test_python3.12/tests/core/test_surface.py:667: This test
relies on neighbor orders and is hard coded. Disable temporarily
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FDINT
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boltztrap2, skipping tests...
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boltztrap2, skipping tests...
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boltztrap2, skipping tests...
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boltztrap2, skipping tests...
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boltztrap2, skipping tests...
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boltztrap2, skipping tests...
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boltztrap2, skipping tests...
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boltztrap2, skipping tests...
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boltztrap2, skipping tests...
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boltztrap2, skipping tests...
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x_trans executable found
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x_trans executable found
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x_trans executable found
SKIPPED [1] .pybuild/test_python3.12/tests/ext/test_cod.py:24: No mysql
SKIPPED [1] .pybuild/test_python3.12/tests/ext/test_cod.py:29: No mysql
SKIPPED [1] .pybuild/test_python3.12/tests/io/test_ase.py:356: ase is present
SKIPPED [1] .pybuild/test_python3.12/tests/io/test_cif.py:284: non-free PF*.cif
test files are not available
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not loaded.
SKIPPED [1] .pybuild/test_python3.12/tests/io/test_jarvis.py:20: JARVIS-tools
not loaded.
SKIPPED [1] .pybuild/test_python3.12/tests/io/test_zeopp.py:72: zeo not present
SKIPPED [1] .pybuild/test_python3.12/tests/io/test_zeopp.py:41: zeo not present
SKIPPED [1] .pybuild/test_python3.12/tests/io/test_zeopp.py:116: zeo not present
SKIPPED [1] .pybuild/test_python3.12/tests/io/test_zeopp.py:85: zeo not present
SKIPPED [1] .pybuild/test_python3.12/tests/io/test_zeopp.py:147: zeo not present
SKIPPED [1] .pybuild/test_python3.12/tests/io/test_zeopp.py:136: zeo not present
SKIPPED [1] .pybuild/test_python3.12/tests/io/test_zeopp.py:168: zeo not present
SKIPPED [1] .pybuild/test_python3.12/tests/io/test_zeopp.py:184: file
free_sph.cif not present
SKIPPED [1] .pybuild/test_python3.12/tests/io/test_zeopp.py:207: zeo not present
SKIPPED [1] .pybuild/test_python3.12/tests/io/test_zeopp.py:228: zeo not present
SKIPPED [1] .pybuild/test_python3.12/tests/symmetry/test_kpath_hin.py:51: No
seek path present.
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seek path present.
SKIPPED [1] .pybuild/test_python3.12/tests/symmetry/test_kpaths.py:22: No seek
path present.
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enum_lib not present.
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.pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:160:
enum_lib not present.
SKIPPED [1]
.pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:190:
enum_lib not present.
SKIPPED [1]
.pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:206:
enum_lib not present.
SKIPPED [1]
.pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:233:
enum_lib not present.
SKIPPED [1]
.pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:245:
enum_lib not present.
SKIPPED [1]
.pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:360:
enum_lib not present.
SKIPPED [1]
.pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:300:
enum_lib not present.
SKIPPED [1]
.pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:338:
enum_lib not present.
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.pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:330:
enum_lib not present.
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enum_lib not present.
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enum_lib not present.
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.pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:536:
enum_lib not present.
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.pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:545:
enum_lib not present.
SKIPPED [1]
.pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:603:
mcsqs not present.
SKIPPED [1]
.pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:613:
mcsqs not present.
SKIPPED [1]
.pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:634:
mcsqs not present.
SKIPPED [1]
.pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:666:
icet not installed.
SKIPPED [1]
.pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:652:
icet not installed.
SKIPPED [1]
.pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:677:
icet not installed.
SKIPPED [1]
.pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:784:
hiphive not present
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.pybuild/test_python3.12/tests/transformations/test_site_transformations.py:213:
enum_lib not present.
SKIPPED [1]
.pybuild/test_python3.12/tests/transformations/test_standard_transformations.py:221:
enum_lib not present.
SKIPPED [1]
.pybuild/test_python3.12/tests/transformations/test_standard_transformations.py:235:
enum_lib not present.
SKIPPED [1]
.pybuild/test_python3.12/tests/transformations/test_standard_transformations.py:246:
enum_lib not present.
SKIPPED [1]
.pybuild/test_python3.12/tests/transformations/test_standard_transformations.py:252:
enum_lib not present.
SKIPPED [1] .pybuild/test_python3.12/tests/util/test_graph_hashing.py:44: could
not import 'emmet.core.graph_hashing': No module named
'emmet.core.graph_hashing'
SKIPPED [1] .pybuild/test_python3.12/tests/util/test_graph_hashing.py:61: could
not import 'emmet.core.graph_hashing': No module named
'emmet.core.graph_hashing'
=== 2 failed, 2434 passed, 154 skipped, 336 deselected in 782.98s (0:13:02) ====
..tot conformations = 3
..tot confs tested = 3
..below energy threshold = 3
make[1]: *** [debian/rules:107: override_dh_auto_test] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:92: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202409/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and affects, so that this is still visible in the BTS web
page for this package.
Thanks.
--- End Message ---
--- Begin Message ---
Source: pymatgen
Source-Version: 2024.10.29+dfsg1-1
Done: Drew Parsons <dpars...@debian.org>
We believe that the bug you reported is fixed in the latest version of
pymatgen, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1082...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Drew Parsons <dpars...@debian.org> (supplier of updated pymatgen package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 08 Nov 2024 10:46:09 +0100
Source: pymatgen
Architecture: source
Version: 2024.10.29+dfsg1-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Drew Parsons <dpars...@debian.org>
Closes: 1081680 1082571 1085812
Changes:
pymatgen (2024.10.29+dfsg1-1) unstable; urgency=medium
.
* New upstream release
- Build-Depends: pymatgen-test-files (>= 2024.10.29~)
- update versioned Build-Depends: python3-monty (>= 2024.7.29~),
python3-networkx (>= 3~), python3-palettable (>= 3.3.3~),
python3-spglib (>= 2.5.0~). Closes: #1081680, #1082571.
* update package Recommends: python3-ase (>= 3.23.0~)
to match Build-Depends.
* refresh debian patches: source moved to src subdir
* update debian patch test_lammps_regex_path.patch to use raw string
r"\+" to treat '+' in "+dfsg" as a literal plus. Closes: #1085812.
* Build-Depends: allow python3-paraview as an alternative to python3-vtk9.
python3-pymatgen Recommends: python3-vtk9 | python3-paraview
* Drop explicit Depends: python3-spglib from python3-pymatgen.
Dependency is automated by dh_python3.
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