Your message dated Wed, 30 Oct 2024 10:02:06 +0000
with message-id <e1t65wg-00aaml...@fasolo.debian.org>
and subject line Bug#1085426: fixed in libpdb-redo 3.1.5-4
has caused the Debian Bug report #1085426,
regarding libpdb-redo: FTBFS: error: ‘Progress’ is not a member of ‘cif’; did
you mean ‘progress_bar’
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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immediately.)
--
1085426: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1085426
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: libpdb-redo
Version: 3.0.5-2
Severity: serious
Tags: ftbfs
Justification: fails to build from source (but built successfully in the past)
X-Debbugs-Cc: sramac...@debian.org
https://buildd.debian.org/status/fetch.php?pkg=libpdb-redo&arch=amd64&ver=3.0.5-2%2Bb3&stamp=1729338255&raw=0
/usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\"
-DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS
-I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -g -O2
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter
-Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT
CMakeFiles/pdb-redo.dir/src/MapMaker.cpp.o -MF
CMakeFiles/pdb-redo.dir/src/MapMaker.cpp.o.d -o
CMakeFiles/pdb-redo.dir/src/MapMaker.cpp.o -c /<<PKGBUILDDIR>>/src/MapMaker.cpp
/<<PKGBUILDDIR>>/src/BondMap.cpp: In constructor
‘pdb_redo::BondMap::BondMap(const cif::datablock&, size_t)’:
/<<PKGBUILDDIR>>/src/BondMap.cpp:193:14: error: ‘Progress’ is not a member of
‘cif’; did you mean ‘progress_bar’?
193 | cif::Progress progress(compounds.size(), "Creating bond map");
| ^~~~~~~~
| progress_bar
/<<PKGBUILDDIR>>/src/DistanceMap.cpp: In constructor
‘pdb_redo::DistanceMap::DistanceMap(const cif::mm::structure&, const
clipper::Spacegroup&, const clipper::Cell&, float)’:
/<<PKGBUILDDIR>>/src/DistanceMap.cpp:273:14: error: ‘Progress’ is not a member
of ‘cif’; did you mean ‘progress_bar’?
273 | cif::Progress progress(residues.size() * (residues.size() - 1),
"Creating distance map");
| ^~~~~~~~
| progress_bar
/<<PKGBUILDDIR>>/src/DistanceMap.cpp:281:25: error: ‘progress’ was not declared
in this scope
281 | progress.consumed(1);
| ^~~~~~~~
make[3]: *** [CMakeFiles/pdb-redo.dir/build.make:93:
CMakeFiles/pdb-redo.dir/src/BondMap.cpp.o] Error 1
Cheers
--
Sebastian Ramacher
--- End Message ---
--- Begin Message ---
Source: libpdb-redo
Source-Version: 3.1.5-4
Done: Maarten L. Hekkelman <maar...@hekkelman.com>
We believe that the bug you reported is fixed in the latest version of
libpdb-redo, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1085...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Maarten L. Hekkelman <maar...@hekkelman.com> (supplier of updated libpdb-redo
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
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Hash: SHA512
Format: 1.8
Date: Tue, 29 Oct 2024 07:33:57 +0100
Source: libpdb-redo
Architecture: source
Version: 3.1.5-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Maarten L. Hekkelman <maar...@hekkelman.com>
Closes: 1046388 1085426
Changes:
libpdb-redo (3.1.5-4) unstable; urgency=medium
.
* Closes: #1046388, #1085426
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