Source: python-biopython Version: 1.84+dfsg-3 Severity: serious Tags: ftbfs Justification: ftbfs
I recently pushed a naive change to python-biopython, and Salsa
CI tripped on the test suite[1]:
ERROR: test_dssp (test_PDB_DSSP.DSSP_tool_test.test_dssp)
Test DSSP generation from PDB.
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/builds/med-team/python-biopython/debian/output/source_dir/.pybuild/cpython3_3.12/build/Tests/test_PDB_DSSP.py",
line 105, in test_dssp
dssp = DSSP(model, pdbfile)
^^^^^^^^^^^^^^^^^^^^
File
"/builds/med-team/python-biopython/debian/output/source_dir/.pybuild/cpython3_3.12/build/Bio/PDB/DSSP.py",
line 387, in __init__
dssp_dict, dssp_keys = dssp_dict_from_pdb_file(
^^^^^^^^^^^^^^^^^^^^^^^^
File
"/builds/med-team/python-biopython/debian/output/source_dir/.pybuild/cpython3_3.12/build/Bio/PDB/DSSP.py",
line 201, in dssp_dict_from_pdb_file
raise Exception("DSSP failed to produce an output")
Exception: DSSP failed to produce an output
[1]: https://salsa.debian.org/med-team/python-biopython/-/jobs/6495336/raw
dssp hasn't changed recently, but the libcifpp on which it
depends has been bumped on October 14th 2024. I haven't checked
for sure but maybe it is related?
Cheers, :)
--
.''`. Étienne Mollier <emoll...@debian.org>
: :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da
`. `' sent from /dev/pts/2, please excuse my verbosity
`- on air: Star One - 28 Days (Till the End of Time)
signature.asc
Description: PGP signature
