Your message dated Sun, 27 Oct 2024 11:28:12 +0000
with message-id <e1t51rm-00floy...@fasolo.debian.org>
and subject line Bug#1079956: fixed in neo 0.13.4-1
has caused the Debian Bug report #1079956,
regarding neo: Tests fail with python-quantities 0.16.0
to be marked as done.
This means that you claim that the problem has been dealt with.
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--
1079956: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1079956
Debian Bug Tracking System
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--- Begin Message ---
Source: neo
Version: 0.13.2-1
Severity: normal
X-Debbugs-Cc: y...@debian.org
Dear Maintainer,
neo is failing tests with python-quantities 0.16.0 in sid.
Part of the error looks like
160s =================================== FAILURES
===================================
160s __
TestAnalogSignalConstructor.test__create_with_copy_true_should_return_copy __
160s
160s self = <neo.test.coretest.test_analogsignal.TestAnalogSignalConstructor
testMethod=test__create_with_copy_true_should_return_copy>
160s
160s def test__create_with_copy_true_should_return_copy(self):
160s data = np.arange(10.0) * pq.mV
160s rate = 5000 * pq.Hz
160s signal = AnalogSignal(data, copy=True, sampling_rate=rate)
160s data[3] = 99 * pq.mV
160s assert_neo_object_is_compliant(signal)
160s > self.assertNotEqual(signal[3, 0], 99 * pq.mV)
160s E AssertionError: array(99.) * mV == array(99.) * mV
160s
160s neo/test/coretest/test_analogsignal.py:140: AssertionError
160s ___________________ TestAnalogSignalCombination.test__merge
____________________
160s
160s self = <neo.test.coretest.test_analogsignal.TestAnalogSignalCombination
testMethod=test__merge>
160s
160s def test__merge(self):
160s self.signal1.description = None
160s self.signal1.file_origin = None
160s assert_neo_object_is_compliant(self.signal1)
160s
160s data3 = np.arange(1000.0, 1066.0).reshape((11, 6)) * pq.uV
160s data3scale = data3.rescale(self.data1quant.units)
160s arr_ann3 = {"anno1": np.arange(5, 11), "anno3": ["h", "i", "j",
"k", "l", "m"]}
160s arr_ann4 = {"anno1": np.arange(100, 106), "anno3": ["o", "p", "q",
"r", "s", "t"]}
160s
160s signal2 = AnalogSignal(
160s self.data1quant,
160s sampling_rate=1 * pq.kHz,
160s name="signal2",
160s description="test signal",
160s file_origin="testfile.txt",
160s array_annotations=self.arr_ann1,
160s )
160s signal3 = AnalogSignal(
160s data3,
160s units="uV",
160s sampling_rate=1 * pq.kHz,
160s name="signal3",
160s description="test signal",
160s file_origin="testfile.txt",
160s array_annotations=arr_ann3,
160s )
160s signal4 = AnalogSignal(
160s data3,
160s units="uV",
160s sampling_rate=1 * pq.kHz,
160s name="signal4",
160s description="test signal",
160s file_origin="testfile.txt",
160s array_annotations=arr_ann4,
160s )
160s
160s with warnings.catch_warnings(record=True) as w:
160s warnings.filterwarnings("always")
160s merged13 = self.signal1.merge(signal3)
160s merged23 = signal2.merge(signal3)
160s merged24 = signal2.merge(signal4)
160s
160s > self.assertTrue(len(w) == 3)
160s E AssertionError: False is not true
160s
160s neo/test/coretest/test_analogsignal.py:1523: AssertionError
160s __
TestIrregularlySampledSignalArrayMethods.test__time_shift_different_units ___
160s
160s self =
<neo.test.coretest.test_irregularysampledsignal.TestIrregularlySampledSignalArrayMethods
testMethod=test__time_shift_different_units>
160s
160s def test__time_shift_different_units(self):
160s shifted = self.signal1.time_shift(1 * pq.s)
160s > assert_arrays_equal(shifted.times, self.signal1.times + 1000 *
pq.ms)
160s
160s neo/test/coretest/test_irregularysampledsignal.py:696:
160s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
_ _ _
160s
160s a = array([ 1010. , 1027.82559402, 1077.42636827,
1215.443469 ,
160s 1599.48425032, 2668.1005372 , 5641.58883361, 13915.49665015,
160s 36938.13663805, 101000. ]) * ms
160s b = array([ 2010. , 2027.82559402, 2077.42636827,
2215.443469 ,
160s 2599.48425032, 3668.1005372 , 6641.58883361, 14915.49665015,
160s 37938.13663805, 102000. ]) * ms
160s dtype = False
160s
160s def assert_arrays_equal(a, b, dtype=False):
160s """
160s Check if two arrays have the same shape and contents.
160s
160s If dtype is True (default=False), then also theck that they have
the same
160s dtype.
160s """
160s assert isinstance(a, np.ndarray), f"a is a {type(a)}"
160s assert isinstance(b, np.ndarray), f"b is a {type(b)}"
160s assert a.shape == b.shape, f"{a} != {b}"
160s # assert a.dtype == b.dtype, "%s and %s not same dtype %s %s" %
(a, b,
160s #
a.dtype,
160s #
b.dtype)
160s try:
160s > assert (a.flatten() == b.flatten()).all(), f"{a} != {b}"
160s E AssertionError: [ 1010. 1027.82559402
1077.42636827 1215.443469
160s E 1599.48425032 2668.1005372 5641.58883361
13915.49665015
160s E 36938.13663805 101000. ] ms != [ 2010.
2027.82559402 2077.42636827 2215.443469
160s E 2599.48425032 3668.1005372 6641.58883361
14915.49665015
160s E 37938.13663805 102000. ] ms
160s
160s neo/test/tools.py:35: AssertionError
Full log at
https://ci.debian.net/packages/n/neo/testing/arm64/51068351/
--- End Message ---
--- Begin Message ---
Source: neo
Source-Version: 0.13.4-1
Done: Étienne Mollier <emoll...@debian.org>
We believe that the bug you reported is fixed in the latest version of
neo, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1079...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Étienne Mollier <emoll...@debian.org> (supplier of updated neo package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sun, 27 Oct 2024 10:59:57 +0100
Source: neo
Architecture: source
Version: 0.13.4-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Étienne Mollier <emoll...@debian.org>
Closes: 1079956
Changes:
neo (0.13.4-1) unstable; urgency=medium
.
* New upstream version 0.13.4 (Closes: #1079956)
* avoid_privacy_breach_image.patch: unfuzz.
* skip_online_tests.patch: unfuzz.
* d/control: neo (build-)depends on python-quantities 0.16.1.
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Files:
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