Your message dated Mon, 14 Oct 2024 14:49:57 +0000
with message-id <e1t0mot-004bcb...@fasolo.debian.org>
and subject line Bug#1080198: fixed in h5py 3.11.0-6
has caused the Debian Bug report #1080198,
regarding h5py: autopkgtest regressions with mpich as default provider on 32
bit architectures
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1080198: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1080198
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: h5py
Version: 3.11.0-5
Severity: serious
User: debian...@lists.debian.org
Usertags: regression
Hi Maintainer
Since the upload of mpi-defaults 1.17, the autopkgtests of h5py have
regressed on 32-bit architectures [1]: I've copied what I hope is the
relevant part of the log below.
Regards
Graham
[1] https://ci.debian.net/packages/h/h5py/testing/armhf/
158s system msg for write_line failure : Bad file descriptor
158s [cli_2]: PMIU_write error; fd=15 buf=:cmd=abort exitcode=-1
message=PMI_Init failed
158s :
158s system msg for write_line failure : Bad file descriptor
158s [cli_2]: PMIU_write error; fd=15 buf=:cmd=get_appnum
158s :
158s system msg for write_line failure : Bad file descriptor
158s Fatal error in internal_Init_thread: Other MPI error, error stack:
158s internal_Init_thread(48394): MPI_Init_thread(argc=(nil),
argv=(nil), required=3, provided=0xff82d538) failed
158s MPII_Init_thread(195)......:
158s MPIR_pmi_init(149).........:
158s (unknown)(): Other MPI error
158s [cli_2]: PMIU_write error; fd=15 buf=:cmd=abort
exitcode=404350991 message=Fatal error in internal_Init_thread: Other
MPI error, error stack:
158s internal_Init_thread(48394): MPI_Init_thread(argc=(nil),
argv=(nil), required=3, provided=0xff82d538) failed
158s MPII_Init_thread(195)......:
158s MPIR_pmi_init(149).........:
158s (unknown)(): Other MPI error
158s :
158s system msg for write_line failure : Bad file descriptor
158s cmd=init pmi_version=1 pmi_subversion=1
158s cmd=abort exitcode=-1 message=PMI_Init failed
158s cmd=get_appnum
158s Fatal error in internal_Init_thread: Other MPI error, error stack:
158s internal_Init_thread(48394): MPI_Init_thread(argc=(nil),
argv=(nil), required=3, provided=0xfffca0a8) failed
158s MPII_Init_thread(195)......:
158s MPIR_pmi_init(149).........:
158s (unknown)(): Other MPI error
158s cmd=abort exitcode=739895311 message=Fatal error in
internal_Init_thread: Other MPI error, error stack:
158s internal_Init_thread(48394): MPI_Init_thread(argc=(nil),
argv=(nil), required=3, provided=0xfffca0a8) failed
158s MPII_Init_thread(195)......:
158s MPIR_pmi_init(149).........:
158s (unknown)(): Other MPI error
158s [cli_3]: PMIU_write error; fd=19 buf=:cmd=init pmi_version=1
pmi_subversion=1
158s :
158s system msg for write_line failure : Bad file descriptor
158s [cli_3]: PMIU_write error; fd=19 buf=:cmd=abort exitcode=-1
message=PMI_Init failed
158s :
158s system msg for write_line failure : Bad file descriptor
158s [cli_3]: PMIU_write error; fd=19 buf=:cmd=get_appnum
158s :
158s system msg for write_line failure : Bad file descriptor
158s Fatal error in internal_Init_thread: Other MPI error, error stack:
158s internal_Init_thread(48394): MPI_Init_thread(argc=(nil),
argv=(nil), required=3, provided=0xffee5d38) failed
158s MPII_Init_thread(195)......:
158s MPIR_pmi_init(149).........:
158s (unknown)(): Other MPI error
158s [cli_3]: PMIU_write error; fd=19 buf=:cmd=abort
exitcode=404350991 message=Fatal error in internal_Init_thread: Other
MPI error, error stack:
158s internal_Init_thread(48394): MPI_Init_thread(argc=(nil),
argv=(nil), required=3, provided=0xffee5d38) failed
158s MPII_Init_thread(195)......:
158s MPIR_pmi_init(149).........:
158s (unknown)(): Other MPI error
158s :
158s system msg for write_line failure : Bad file descriptor
158s PASSED [ 75%]
158s tests/test_ros3.py::test_ros3_temp_token SKIPPED (AWS S3 access
toke...) [100%]Fatal error in internal_Init_thread: Other MPI error,
error stack:
158s internal_Init_thread(48394): MPI_Init_thread(argc=(nil),
argv=(nil), required=3, provided=0xff8e4e68) failed
158s MPII_Init_thread(195)......:
158s MPIR_pmi_init(149).........:
158s (unknown)(): Other MPI error
158s autopkgtest [12:30:09]: test python3-mpi-network: -----------------------]
--- End Message ---
--- Begin Message ---
Source: h5py
Source-Version: 3.11.0-6
Done: Drew Parsons <dpars...@debian.org>
We believe that the bug you reported is fixed in the latest version of
h5py, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1080...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Drew Parsons <dpars...@debian.org> (supplier of updated h5py package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 14 Oct 2024 16:35:39 +0200
Source: h5py
Architecture: source
Version: 3.11.0-6
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Drew Parsons <dpars...@debian.org>
Closes: 1080198
Changes:
h5py (3.11.0-6) unstable; urgency=medium
.
* debian/tests: run all MPI tests directly via pytest --with-mpi
instead of h5py.runtest(), which crashes with MPICH (32-bit).
Closes: #1080198
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--- End Message ---
