Your message dated Fri, 11 Oct 2024 21:45:04 +0200 with message-id <E1szLZQ-000000017hG-3W0q@sandy> and subject line fenics-dolfinx: FTBFS: The imported target "adios2::EncryptionOperator" has caused the Debian Bug report #1084255, regarding fenics-dolfinx: FTBFS: The imported target "adios2::EncryptionOperator" references the file "/usr/lib/x86_64-linux-gnu/adios2/mpi/plugins/libEncryptionOperator.so" but this file does not exist. to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 1084255: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1084255 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: src:fenics-dolfinx Version: 1:0.8.0-11 Severity: serious Tags: ftbfs Dear maintainer: During a rebuild of all packages in unstable, your package failed to build: -------------------------------------------------------------------------------- [...] debian/rules binary dh binary --buildsystem=cmake --with python3,sphinxdoc dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/<<PKGBUILDDIR>>' PETSC_DIR=/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real dh_auto_configure --builddir=/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu-real -D/<<PKGBUILDDIR>>/cpp -- -D CMAKE_BUILD_TYPE:STRING=RelWithDebInfo -D BUILD_SHARED_LIBS:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D DOLFINX_ENABLE_TRILINOS:BOOL=OFF -D DOLFINX_ENABLE_HDF5:BOOL=ON -D HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc -D DOLFINX_ENABLE_PARMETIS:BOOL=OFF -D DOLFINX_ENABLE_SCOTCH:BOOL=ON -D DOLFINX_ENABLE_DOCS:BOOL=OFF -D DOLFINX_ENABLE_MPI:BOOL=ON -D MPIEXEC_PARAMS:STRING="--oversubscribe" -D CMAKE_CXX_FLAGS:STRING="-fpermissive" -D DOLFINX_EXTRA_CXX_FLAGS:STRING="-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" -D DEBIAN_VERSION_ID=debian_1:0.8.0-11 cd obj-x86_64-linux-gnu-real && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -D CMAKE_BUILD_TYPE:STRING=RelWithDebInfo -D BUILD_SHARED_LIBS:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D DOLFINX_ENABLE_TRILINOS:BOOL=OFF -D DOLFINX_ENABLE_HDF5:BOOL=ON -D HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc -D DOLFINX_ENABLE_PARMETIS:BOOL=OFF -D DOLFINX_ENABLE_SCOTCH:BOOL=ON -D DOLFINX_ENABLE_DOCS:BOOL=OFF -D DOLFINX_ENABLE_MPI:BOOL=ON -D MPIEXEC_PARAMS:STRING=--oversubscribe -D CMAKE_CXX_FLAGS:STRING=-fpermissive -D "DOLFINX_EXTRA_CXX_FLAGS:STRING=-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" -D DEBIAN_VERSION_ID=debian_1:0.8.0-11 ../cpp -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found suitable version "3.1", minimum required is "3") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found suitable version "3.1", minimum required is "3") -- Found MPI: TRUE (found suitable version "3.1", minimum required is "3") -- Performing Test HAVE_PIPE -- Performing Test HAVE_PIPE - Success -- Performing Test HAVE_PEDANTIC -- Performing Test HAVE_PEDANTIC - Success -- Performing Test HAVE_DEBUG -- Performing Test HAVE_DEBUG - Success -- Performing Test HAVE_O2_OPTIMISATION -- Performing Test HAVE_O2_OPTIMISATION - Success CMake Warning (dev) at CMakeLists.txt:274 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer -- Found boost_headers 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.70") found components: timer -- Checking for basix hints with /usr/bin/python3 -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found Python3: /usr/bin/python3 (found version "3.12.7") found components: Interpreter -- Asking Python module FFCx for location of UFC... (Python executable: /usr/bin/python3) -- Found UFCx: /usr/lib/python3/dist-packages/ffcx/codegeneration (found suitable version "0.8.0", minimum required is "0.8") -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.10.1", minimum required is "2.8.1") found components: CXX CMake Error at /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-targets.cmake:137 (message): The imported target "adios2::EncryptionOperator" references the file "/usr/lib/x86_64-linux-gnu/adios2/mpi/plugins/libEncryptionOperator.so" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-targets.cmake" but not all the files it references. Call Stack (most recent call first): /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config-common.cmake:214 (include) /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake:29 (include) /usr/lib/x86_64-linux-gnu/cmake/adios2/adios2-config.cmake:9 (include) CMakeLists.txt:366 (find_package) -- Configuring incomplete, errors occurred! cd obj-x86_64-linux-gnu-real && tail -v -n \+0 CMakeCache.txt ==> CMakeCache.txt <== # This is the CMakeCache file. # For build in directory: /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu-real # It was generated by CMake: /usr/bin/cmake # You can edit this file to change values found and used by cmake. # If you do not want to change any of the values, simply exit the editor. # If you do want to change a value, simply edit, save, and exit the editor. # The syntax for the file is as follows: # KEY:TYPE=VALUE # KEY is the name of a variable in the cache. # TYPE is a hint to GUIs for the type of VALUE, DO NOT EDIT TYPE!. # VALUE is the current value for the KEY. ######################## # EXTERNAL cache entries ######################## //The directory containing a CMake configuration file for ADIOS2. 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CMAKE_STATIC_LINKER_FLAGS_DEBUG:STRING= //Flags used by the linker during the creation of static libraries // during MINSIZEREL builds. CMAKE_STATIC_LINKER_FLAGS_MINSIZEREL:STRING= //Flags used by the linker during the creation of static libraries // during RELEASE builds. CMAKE_STATIC_LINKER_FLAGS_RELEASE:STRING= //Flags used by the linker during the creation of static libraries // during RELWITHDEBINFO builds. CMAKE_STATIC_LINKER_FLAGS_RELWITHDEBINFO:STRING= //Path to a program. CMAKE_STRIP:FILEPATH=/usr/bin/strip //Path to a program. CMAKE_TAPI:FILEPATH=CMAKE_TAPI-NOTFOUND //If this value is on, makefiles will be generated without the // .SILENT directive, and all commands will be echoed to the console // during the make. This is useful for debugging only. With Visual // Studio IDE projects all commands are done without /nologo. CMAKE_VERBOSE_MAKEFILE:BOOL=ON //No help, variable specified on the command line. DEBIAN_VERSION_ID:UNINITIALIZED=debian_1:0.8.0-11 //Value Computed by CMake DOLFINX_BINARY_DIR:STATIC=/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu-real //Compile with support for ADIOS2. DOLFINX_ENABLE_ADIOS2:BOOL=ON //No help, variable specified on the command line. DOLFINX_ENABLE_DOCS:BOOL=OFF //No help, variable specified on the command line. DOLFINX_ENABLE_HDF5:BOOL=ON //Compile with support for KaHIP. DOLFINX_ENABLE_KAHIP:BOOL=OFF //No help, variable specified on the command line. DOLFINX_ENABLE_MPI:BOOL=ON //Compile with support for ParMETIS. DOLFINX_ENABLE_PARMETIS:BOOL=OFF //Compile with support for PETSc. DOLFINX_ENABLE_PETSC:BOOL=ON //Compile with support for SCOTCH. DOLFINX_ENABLE_SCOTCH:BOOL=ON //Compile with support for SLEPc. DOLFINX_ENABLE_SLEPC:BOOL=ON //No help, variable specified on the command line. DOLFINX_ENABLE_TRILINOS:BOOL=OFF //No help, variable specified on the command line. DOLFINX_EXTRA_CXX_FLAGS:STRING=-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection //Value Computed by CMake DOLFINX_IS_TOP_LEVEL:STATIC=ON //Skip build tests for testing usability of dependency packages. DOLFINX_SKIP_BUILD_TESTS:BOOL=OFF //Value Computed by CMake DOLFINX_SOURCE_DIR:STATIC=/<<PKGBUILDDIR>>/cpp //Enable UFCx discovery using Python. Disable if UFCx should be // found using CMake. DOLFINX_UFCX_PYTHON:BOOL=ON //Version for Doxygen DOXYGEN_DOLFINX_VERSION:STRING=0.8.0 //No help, variable specified on the command line. FETCHCONTENT_FULLY_DISCONNECTED:UNINITIALIZED=ON //Path to a program. GIT_FOUND:FILEPATH=GIT_FOUND-NOTFOUND //No help, variable specified on the command line. HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc //Path to a library. HDF5_C_LIBRARY_crypto:FILEPATH=/usr/lib/x86_64-linux-gnu/libcrypto.so //Path to a library. 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-fcf-protection" -D DEBIAN_VERSION_ID=debian_1:0.8.0-11 ../cpp returned exit code 1 make[1]: *** [debian/rules:177: override_dh_auto_configure] Error 2 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:161: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 -------------------------------------------------------------------------------- The above is just how the build ends and not necessarily the most relevant part. If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202410/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you could not reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and affects, so that this is still visible in the BTS web page for this package. Thanks.
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